Alpha proteobacterium HIMB59

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Description

Alpha proteobacterium HIMB59 is characterized by having a single replicon, which is significant for its genomic structure and replication dynamics. The genomic information of this bacterium is cataloged under the accession number NC_018644.1, providing a reference point for researchers interested in its genetic makeup and potential applications. As an Alpha proteobacterium, HIMB59 is part of a diverse group of bacteria known for their ecological roles, particularly in aquatic environments. This group includes many important microorganisms that contribute to nutrient cycling and have symbiotic relationships with plants and other organisms. Although specific ecological interactions of HIMB59 are not detailed, members of the Alpha proteobacteria are commonly involved in processes such as nitrogen fixation and degradation of organic materials. Understanding the genomic traits of HIMB59, particularly its single replicon, may offer insights into its metabolic capabilities and evolutionary adaptations. The streamlined genomic structure could suggest a specialization in niche environments, allowing it to thrive in specific ecological contexts. The study of such microorganisms can enhance our understanding of biodiversity and ecosystem functioning, particularly in marine ecosystems where Alpha proteobacteria are abundant and play critical roles in biogeochemical cycles.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alpha proteobacterium HIMB59, complete sequence.

Gene Summary

Adenine Count

479567 bp

Thymine Count

475606 bp

Guanine Count

226594 bp

Cytosine Count

228360 bp

Genome Length

1410127 bp

Protein-coding Genes

1482 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
riboflavin biosynthesis protein ribfHIMB59_RS03625Not AvailablePositive677124 - 67806236068.4
isoleucine--trna ligaseHIMB59_RS03630Not AvailablePositive678052 - 680829106828.0
signal peptidase iiHIMB59_RS03635Not AvailablePositive680807 - 68129218584.2
hypothetical proteinHIMB59_RS03640Not AvailablePositive681289 - 68160311486.6
glucose-6-phosphate isomeraseHIMB59_RS03645Not AvailablePositive681630 - 68278744989.8
rsmd family rna methyltransferaseHIMB59_RS03650Not AvailableNegative683079 - 68360920404.6
pseudouridine synthaseHIMB59_RS03655Not AvailableNegative683596 - 68428226933.1
gamma-glutamyl-gamma-aminobutyrate hydrolase family proteinHIMB59_RS03660Not AvailableNegative684263 - 68497026830.9
nucleoside deaminaseHIMB59_RS03665Not AvailablePositive684972 - 68539716409.5
phosphoribosylamine--glycine ligaseHIMB59_RS03670Not AvailableNegative685387 - 68664947417.1

Displaying genes 731 – 740 of 1523 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.