Alpha proteobacterium HIMB59

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Description

Alpha proteobacterium HIMB59 is characterized by having a single replicon, which is significant for its genomic structure and replication dynamics. The genomic information of this bacterium is cataloged under the accession number NC_018644.1, providing a reference point for researchers interested in its genetic makeup and potential applications. As an Alpha proteobacterium, HIMB59 is part of a diverse group of bacteria known for their ecological roles, particularly in aquatic environments. This group includes many important microorganisms that contribute to nutrient cycling and have symbiotic relationships with plants and other organisms. Although specific ecological interactions of HIMB59 are not detailed, members of the Alpha proteobacteria are commonly involved in processes such as nitrogen fixation and degradation of organic materials. Understanding the genomic traits of HIMB59, particularly its single replicon, may offer insights into its metabolic capabilities and evolutionary adaptations. The streamlined genomic structure could suggest a specialization in niche environments, allowing it to thrive in specific ecological contexts. The study of such microorganisms can enhance our understanding of biodiversity and ecosystem functioning, particularly in marine ecosystems where Alpha proteobacteria are abundant and play critical roles in biogeochemical cycles.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alpha proteobacterium HIMB59, complete sequence.

Gene Summary

Adenine Count

479567 bp

Thymine Count

475606 bp

Guanine Count

226594 bp

Cytosine Count

228360 bp

Genome Length

1410127 bp

Protein-coding Genes

1482 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoglutarate dehydrogenase e1 componentHIMB59_RS01290Not AvailableNegative239246 - 242098108131.0
malate dehydrogenaseHIMB59_RS01295Not AvailableNegative242152 - 24309933890.2
succinate dehydrogenase iron-sulfur subunitHIMB59_RS01300Not AvailableNegative243099 - 24389630506.6
succinate dehydrogenase flavoprotein subunitHIMB59_RS01305Not AvailableNegative243896 - 24567764346.2
succinate dehydrogenase, hydrophobic membrane anchor proteinHIMB59_RS01310Not AvailableNegative245678 - 24599212284.4
succinate dehydrogenase, cytochrome b556 subunitHIMB59_RS01315Not AvailableNegative245992 - 24636314293.0
trap transporter small permease subunitHIMB59_RS01320Not AvailablePositive246671 - 24718319676.6
trap transporter large permeaseHIMB59_RS01325Not AvailablePositive247180 - 24855648952.3
glycerophosphodiester phosphodiesterase family proteinHIMB59_RS01330Not AvailableNegative248574 - 24949435464.0
trap transporter substrate-binding proteinHIMB59_RS01335Not AvailableNegative249550 - 25067740553.2

Displaying genes 261 – 270 of 1523 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.