Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Candidatus Pelagibacterales
Family
Candidatus Pelagibacteraceae
Genus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Candidatus Pelagibacterales |
| Family | Candidatus Pelagibacteraceae |
| Genus | /taxonomy?family=Candidatus+Pelagibacteraceae&kingdom=Pseudomonadati&klass=Alphaproteobacteria&level=genus&order=Candidatus+Pelagibacterales&phylum=Pseudomonadota |
| Species | alpha proteobacterium HIMB5 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
476776 bp
Thymine Count
481842 bp
Guanine Count
191230 bp
Cytosine Count
193354 bp
Genome Length
1343202 bp
Protein-coding Genes
1405 genes
Non-Coding Genes
37 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-diaminopimelate desuccinylase | HIMB5_RS06080 | Not Available | Positive | 1137188 - 1138342 | 42727.4 |
| histone deacetylase family protein | HIMB5_RS06085 | Not Available | Positive | 1138339 - 1139268 | 34858.2 |
| set domain-containing protein | HIMB5_RS06090 | Not Available | Positive | 1139302 - 1139799 | 19240.2 |
| trna pseudouridine(38-40) synthase trua | HIMB5_RS06095 | Not Available | Negative | 1139773 - 1140513 | 28495.2 |
| methionyl-trna formyltransferase | HIMB5_RS06100 | Not Available | Negative | 1140506 - 1141435 | 34700.9 |
| peptide deformylase | HIMB5_RS06105 | Not Available | Negative | 1141439 - 1141957 | 19399.8 |
| hypothetical protein | HIMB5_RS06110 | Not Available | Negative | 1141979 - 1143757 | 69060.3 |
| shikimate kinase | HIMB5_RS06120 | Not Available | Positive | 1143975 - 1144487 | 19822.6 |
| 3-dehydroquinate synthase | HIMB5_RS06125 | Not Available | Positive | 1144474 - 1145577 | 42160.9 |
| bola family protein | HIMB5_RS06130 | Not Available | Negative | 1145566 - 1145826 | 10120.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
