Xanthomonas campestris pv. raphani 756C

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. raphani 756C is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This organism requires oxygen for growth, classifying it as an aerobe. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. Xanthomonas campestris pv. raphani 756C is associated with plant hosts, indicating its role in plant microbiomes. It is characterized by a biotic relationship that is free-living, suggesting it can exist independently of a host. The bacterium possesses a single replicon and is comprised of two membranes, which is typical for Gram-negative bacteria. The accessions associated with this strain include NC_017271.1, which provides a reference for genomic studies and further research into its characteristics and interactions. Understanding the traits of Xanthomonas campestris pv. raphani 756C can offer insights into its ecological role within agricultural systems, particularly in relation to plant health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. raphani 756C

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. raphani 756C
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. raphani 756C, complete sequence.

Gene Summary

Adenine Count

858478 bp

Thymine Count

856742 bp

Guanine Count

1613884 bp

Cytosine Count

1612110 bp

Genome Length

4941214 bp

Protein-coding Genes

4095 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolase family 28 proteinXCR_RS11475Not AvailablePositive2653139 - 265480958466.6
squalene/phytoene synthase family proteinXCR_RS11480Not AvailableNegative2654869 - 265555825747.6
phosphoglycolate phosphataseXCR_RS11485Not AvailableNegative2655587 - 265629125427.9
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigXCR_RS11490Not AvailableNegative2656365 - 265708426019.3
trz/atz family hydrolaseXCR_RS11495Not AvailableNegative2657113 - 265845048001.3
hypothetical proteinXCR_RS11500Not AvailableNegative2658468 - 265931329532.2
elongation factor pXCR_RS11505Not AvailableNegative2659319 - 265988520834.8
ef-p beta-lysylation protein epmbXCR_RS11510Not AvailablePositive2659987 - 266101537057.8
putative bifunctional diguanylate cyclase/phosphodiesteraseXCR_RS11515Not AvailableNegative2661504 - 266362177007.3
phosphate/phosphite/phosphonate abc transporter substrate-binding proteinXCR_RS11520Not AvailableNegative2663618 - 266453533435.7

Displaying genes 2371 – 2380 of 4264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004070beta-D-Glc-(1->4)-alpha-D-Glc-di-trans,octa-cis-undecaprenyl diphosphateC67H110O17P2Chemical structure of beta-D-Glc-(1->4)-alpha-D-Glc-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1249.549Da
Monoisotopic1248.722923Da
BASm0004071alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-di-trans,octa-cis-undecaprenyl diphosphateC73H120O22P2Chemical structure of alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1411.69Da
Monoisotopic1410.775747Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm0011719bisucaberinC18H32N4O6Chemical structure of bisucaberinNot available
Average400.476Da
Monoisotopic400.232184766Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014079FuranC4H4OChemical structure of Furan110-00-9
Average68.074Da
Monoisotopic68.02621475Da
BASm0014413N-acetyl-3-amino-3,6-dideoxy-d-galactoseC8H15NO5Chemical structure of N-acetyl-3-amino-3,6-dideoxy-d-galactoseNULL
Average205.21Da
Monoisotopic205.095022587Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.