Tetragenococcus halophilus NBRC 12172

Cocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Enterococcaceae

Genus

Tetragenococcus

Description

Tetragenococcus halophilus NBRC 12172 is a Gram-positive bacterium characterized by its cocci shape. This organism is notable for having a single replicon, indicating a streamlined genetic structure. The strain has been cataloged under the accession number NC_016052.1, which provides a reference for its genomic information. Tetragenococcus halophilus is typically found in high-salinity environments, such as fermented foods and saline habitats, where it plays a significant role in food preservation and fermentation processes. Its ability to thrive in these extreme conditions highlights its ecological niche and potential applications in biotechnology, particularly in the production of fermented products. The presence of Tetragenococcus halophilus in saline environments suggests its adaptation mechanisms to osmotic stress, which could be of interest in studies addressing microbial survival strategies in extreme conditions. Understanding the specific traits of this organism may contribute to the development of novel fermentation techniques and improve the quality and safety of food products. Its role in fermentation processes can also provide insights into microbial interactions within high-salt ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusTetragenococcus
SpeciesTetragenococcus halophilus
StrainNBRC 12172

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tetragenococcus halophilus NBRC 12172


Gene Summary

Adenine Count

820683 bp

Thymine Count

818405 bp

Guanine Count

465935 bp

Cytosine Count

457697 bp

Genome Length

2562720 bp

Protein-coding Genes

2457 genes

Non-Coding Genes

120 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine--trna ligaseTEH_RS00130Q839V5Positive28596 - 3000554689.6
mini-ribonuclease 3TEH_RS00135Q839V4Positive30002 - 3039114956.8
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbTEH_RS00140Q06753Positive30488 - 3127928967.9
nyn domain-containing proteinTEH_RS00145P37574Positive31286 - 3180419985.0
sigma-70 family rna polymerase sigma factorTEH_RS00150Not AvailablePositive31901 - 3246421715.9
veg family proteinTEH_RS00155P37466Positive32503 - 3280211247.6
large conductance mechanosensitive channel protein msclTEH_RS00160Q82ZB4Negative32883 - 3334716757.8
ef-p 5-aminopentanol modification-associated protein yfmfTEH_RS00165O31764Positive33553 - 3482148399.9
ef-p 5-aminopentanol modification-associated protein yfmhTEH_RS00170O31766Positive34814 - 3611250177.6
rodz family helix-turn-helix domain-containing proteinTEH_RS00175O31771Positive36209 - 3709032603.4

Displaying genes 91 – 100 of 2577 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

135 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 135 metabolites

Health Effects

No health effects information available for this bacterium.