Candidatus Arthromitus sp. SFB-rat-Yit

Gram-negative

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Candidatus Neoarthromitus

Description

Candidatus Arthromitus sp. SFB-rat-Yit is a Gram-negative bacterium characterized by a single replicon, as indicated by its genomic structure. The organism is cataloged under the accession number NC_016012.1, which provides a reference for its genetic sequence and related studies. As a member of the microbiota, Candidatus Arthromitus sp. is known to be associated with the gastrointestinal tract of rats, particularly in the context of their role in host-microbe interactions. While the specific ecological functions of this bacterium remain to be fully elucidated, its classification as a segmented filamentous bacterium (SFB) suggests an important role in the development and modulation of the host's immune system. SFBs, including Candidatus Arthromitus, are recognized for their potential influence on the host's gut health and overall immunity. They are hypothesized to play a role in promoting the differentiation of T helper 17 (Th17) cells, which are crucial for maintaining intestinal homeostasis and defending against pathogens. This relationship underscores the ecological significance of Candidatus Arthromitus sp. SFB-rat-Yit in shaping the microbial landscape and influencing the physiological responses of their rat hosts. In conclusion, Candidatus Arthromitus sp. SFB-rat-Yit exemplifies the complex interplay between gut microbiota and host health, highlighting the importance of studying such bacteria to better understand their contributions to immune system development and maintenance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusCandidatus Neoarthromitus
SpeciesCandidatus Arthromitus sp. SFB-rat-Yit
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Arthromitus sp. SFB-rat-Yit, complete sequence.

Gene Summary

Adenine Count

544981 bp

Thymine Count

546539 bp

Guanine Count

213109 bp

Cytosine Count

210927 bp

Genome Length

1515556 bp

Protein-coding Genes

1402 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-dependent flavin oxidoreductaseRATSFB_RS03120Not AvailablePositive659773 - 66090641574.7
yran family proteinRATSFB_RS03125Not AvailableNegative660948 - 66131014318.6
dna/rna non-specific endonucleaseRATSFB_RS03130Not AvailableNegative661331 - 66209229052.7
duf5780 domain-containing proteinRATSFB_RS03135Not AvailablePositive662219 - 66280322281.5
crispr-associated helicase/endonuclease cas3RATSFB_RS03140Not AvailablePositive662921 - 66515285438.9
type i-c crispr-associated protein cas5cRATSFB_RS03145Not AvailablePositive665171 - 66585126670.1
type i-c crispr-associated protein cas8c/csd1RATSFB_RS03150Not AvailablePositive665848 - 66768670135.1
type i-c crispr-associated protein cas7/csd2RATSFB_RS03155Not AvailablePositive667689 - 66855532874.3
crispr-associated protein cas4RATSFB_RS03160Not AvailablePositive668545 - 66921326241.7
type i-c crispr-associated endonuclease cas1cRATSFB_RS03165Not AvailablePositive669185 - 67008434592.5

Displaying genes 641 – 650 of 1460 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.