Candidatus Protofrankia datiscae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Protofrankia

Description

Candidatus Protofrankia datiscae is a notable bacterium characterized by its possession of two replicons. This trait suggests a specific genomic organization that could play a role in its adaptability and functionality within its ecological niche. The organism is classified under the genus Protofrankia, which points to its potential involvement in symbiotic relationships, particularly in association with certain plant species. The genome of Candidatus Protofrankia datiscae is represented by two accessions: NC_015656.1 and NC_015664.1. These genomic sequences provide foundational information for understanding the genetic makeup and possible metabolic pathways of the organism. The dual replicon system may indicate a complex regulatory mechanism that can influence gene expression and adaptation to environmental changes. An ecological insight into Candidatus Protofrankia datiscae lies in its likely role in nitrogen fixation, a process that can enhance soil fertility and promote plant growth. This association is critical in ecosystems where nitrogen availability is limited, and the presence of such bacteria can significantly impact plant health and the overall productivity of the environment. Understanding the specifics of Candidatus Protofrankia datiscae's biology and ecology can provide valuable information for agricultural practices and ecosystem management, particularly in arid or nutrient-poor soils where these microorganisms may thrive.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusProtofrankia
SpeciesCandidatus Protofrankia datiscae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protofrankia datiscae plasmid pFSYMDG01, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nudix hydrolaseFSYMDG_RS04290P46351Positive1026092 - 102651714872.8
rnhcp domain-containing proteinFSYMDG_RS04295Not AvailableNegative1026574 - 102708619261.9
llm class f420-dependent oxidoreductaseFSYMDG_RS04300Not AvailablePositive1027476 - 102836632082.8
terd family proteinFSYMDG_RS04310Q52353Positive1028834 - 103032451420.7
acyl-coa dehydrogenase family proteinFSYMDG_RS04315Not AvailableNegative1030629 - 103182843975.9
glycoside hydrolase family 6 proteinFSYMDG_RS04320P26222Positive1032210 - 103332838302.9
type ii toxin-antitoxin system vapc family toxinFSYMDG_RS04325O50411Negative1033453 - 103385114292.3
type ii toxin-antitoxin system phd/yefm family antitoxinFSYMDG_RS04330Not AvailableNegative1033848 - 103412910320.3
magnesium transporter mgte n-terminal domain-containing proteinFSYMDG_RS04335Q5SMG8Positive1034762 - 103614748834.5
duf1003 domain-containing proteinFSYMDG_RS04340Not AvailablePositive1036147 - 103678824030.5

Displaying genes 891 – 900 of 4596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.