Candidatus Protofrankia datiscae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Protofrankia

Description

Candidatus Protofrankia datiscae is a notable bacterium characterized by its possession of two replicons. This trait suggests a specific genomic organization that could play a role in its adaptability and functionality within its ecological niche. The organism is classified under the genus Protofrankia, which points to its potential involvement in symbiotic relationships, particularly in association with certain plant species. The genome of Candidatus Protofrankia datiscae is represented by two accessions: NC_015656.1 and NC_015664.1. These genomic sequences provide foundational information for understanding the genetic makeup and possible metabolic pathways of the organism. The dual replicon system may indicate a complex regulatory mechanism that can influence gene expression and adaptation to environmental changes. An ecological insight into Candidatus Protofrankia datiscae lies in its likely role in nitrogen fixation, a process that can enhance soil fertility and promote plant growth. This association is critical in ecosystems where nitrogen availability is limited, and the presence of such bacteria can significantly impact plant health and the overall productivity of the environment. Understanding the specifics of Candidatus Protofrankia datiscae's biology and ecology can provide valuable information for agricultural practices and ecosystem management, particularly in arid or nutrient-poor soils where these microorganisms may thrive.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusProtofrankia
SpeciesCandidatus Protofrankia datiscae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protofrankia datiscae plasmid pFSYMDG01, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitroreductase family deazaflavin-dependent oxidoreductaseFSYMDG_RS00150Not AvailableNegative35488 - 3595217315.6
deda family proteinFSYMDG_RS00155O69601Positive36436 - 3715225607.7
ybhb/ybcl family raf kinase inhibitor-like proteinFSYMDG_RS00160Q9X9Z8Positive37820 - 3836218981.0
dlw-39 family proteinFSYMDG_RS00165Not AvailablePositive38531 - 386624629.69
methionyl-trna formyltransferaseFSYMDG_RS00170B7LM76Negative38768 - 3971235278.6
abc transporter atp-binding proteinFSYMDG_RS00175O32188Negative39923 - 4073829249.7
iron chelate uptake abc transporter family permease subunitFSYMDG_RS00180P23877Negative40869 - 4194836399.4
iron abc transporter permeaseFSYMDG_RS00185P23876Negative42048 - 4304633978.7
iron-siderophore abc transporter substrate-binding proteinFSYMDG_RS00190C0SP94Positive43427 - 4441035014.4
rnhcp domain-containing proteinFSYMDG_RS29450Not AvailablePositive45171 - 55598364824.0

Displaying genes 41 – 50 of 4596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.