Candidatus Protofrankia datiscae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Protofrankia

Description

Candidatus Protofrankia datiscae is a notable bacterium characterized by its possession of two replicons. This trait suggests a specific genomic organization that could play a role in its adaptability and functionality within its ecological niche. The organism is classified under the genus Protofrankia, which points to its potential involvement in symbiotic relationships, particularly in association with certain plant species. The genome of Candidatus Protofrankia datiscae is represented by two accessions: NC_015656.1 and NC_015664.1. These genomic sequences provide foundational information for understanding the genetic makeup and possible metabolic pathways of the organism. The dual replicon system may indicate a complex regulatory mechanism that can influence gene expression and adaptation to environmental changes. An ecological insight into Candidatus Protofrankia datiscae lies in its likely role in nitrogen fixation, a process that can enhance soil fertility and promote plant growth. This association is critical in ecosystems where nitrogen availability is limited, and the presence of such bacteria can significantly impact plant health and the overall productivity of the environment. Understanding the specifics of Candidatus Protofrankia datiscae's biology and ecology can provide valuable information for agricultural practices and ecosystem management, particularly in arid or nutrient-poor soils where these microorganisms may thrive.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusProtofrankia
SpeciesCandidatus Protofrankia datiscae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protofrankia datiscae plasmid pFSYMDG01, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFSYMDG_RS20605Not AvailableNegative4883472 - 488439531712.3
mgdg synthase family glycosyltransferaseFSYMDG_RS20610Not AvailableNegative4884510 - 488567941216.9
nad(p)-dependent oxidoreductaseFSYMDG_RS20615Not AvailableNegative4885683 - 488667835792.5
degt/dnrj/eryc1/strs aminotransferase family proteinFSYMDG_RS20620P15263Negative4886763 - 488789339752.3
hypothetical proteinFSYMDG_RS20625Not AvailablePositive4889073 - 488940512134.3
alpha/beta fold hydrolaseFSYMDG_RS20630Not AvailablePositive4889940 - 489084233180.9
mfs transporterFSYMDG_RS20635Q180E3Negative4890922 - 489272163225.1
fmdb family zinc ribbon proteinFSYMDG_RS20640Not AvailableNegative4892965 - 48931897437.7
atp-dependent 6-phosphofructokinaseFSYMDG_RS20645Q8VU09Negative4893459 - 489479348219.7
pp2c family protein-serine/threonine phosphataseFSYMDG_RS20650Not AvailableNegative4895368 - 489648038482.7

Displaying genes 4231 – 4240 of 4596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.