Candidatus Protofrankia datiscae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Protofrankia

Description

Candidatus Protofrankia datiscae is a notable bacterium characterized by its possession of two replicons. This trait suggests a specific genomic organization that could play a role in its adaptability and functionality within its ecological niche. The organism is classified under the genus Protofrankia, which points to its potential involvement in symbiotic relationships, particularly in association with certain plant species. The genome of Candidatus Protofrankia datiscae is represented by two accessions: NC_015656.1 and NC_015664.1. These genomic sequences provide foundational information for understanding the genetic makeup and possible metabolic pathways of the organism. The dual replicon system may indicate a complex regulatory mechanism that can influence gene expression and adaptation to environmental changes. An ecological insight into Candidatus Protofrankia datiscae lies in its likely role in nitrogen fixation, a process that can enhance soil fertility and promote plant growth. This association is critical in ecosystems where nitrogen availability is limited, and the presence of such bacteria can significantly impact plant health and the overall productivity of the environment. Understanding the specifics of Candidatus Protofrankia datiscae's biology and ecology can provide valuable information for agricultural practices and ecosystem management, particularly in arid or nutrient-poor soils where these microorganisms may thrive.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusProtofrankia
SpeciesCandidatus Protofrankia datiscae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protofrankia datiscae plasmid pFSYMDG01, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine--trna ligaseFSYMDG_RS20325Q47RX0Negative4828364 - 482968348827.0
nucleoside monophosphate kinaseFSYMDG_RS20330B7IHW7Negative4829942 - 483058624344.2
rnhcp domain-containing proteinFSYMDG_RS20335Q58373Positive4831322 - 483266246332.1
hypothetical proteinFSYMDG_RS29305Not AvailablePositive4832778 - 48328853408.07
hypothetical proteinFSYMDG_RS20340Not AvailablePositive4833384 - 483398021936.8
utp--glucose-1-phosphate uridylyltransferase galuFSYMDG_RS20345O31822Positive4834152 - 483508133376.0
gephyrin-like molybdotransferase glpFSYMDG_RS20350P9WJQ4Positive4835155 - 483643842991.9
cyclic pyranopterin monophosphate synthase moacFSYMDG_RS20355Q9RKA8Positive4836492 - 483695615915.3
molybdenum cofactor biosynthesis protein bFSYMDG_RS20360Q56208Positive4837028 - 483762719951.5
gnat family n-acetyltransferaseFSYMDG_RS20365O31633Positive4837624 - 483825623500.2

Displaying genes 4171 – 4180 of 4596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.