Candidatus Protofrankia datiscae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Protofrankia

Description

Candidatus Protofrankia datiscae is a notable bacterium characterized by its possession of two replicons. This trait suggests a specific genomic organization that could play a role in its adaptability and functionality within its ecological niche. The organism is classified under the genus Protofrankia, which points to its potential involvement in symbiotic relationships, particularly in association with certain plant species. The genome of Candidatus Protofrankia datiscae is represented by two accessions: NC_015656.1 and NC_015664.1. These genomic sequences provide foundational information for understanding the genetic makeup and possible metabolic pathways of the organism. The dual replicon system may indicate a complex regulatory mechanism that can influence gene expression and adaptation to environmental changes. An ecological insight into Candidatus Protofrankia datiscae lies in its likely role in nitrogen fixation, a process that can enhance soil fertility and promote plant growth. This association is critical in ecosystems where nitrogen availability is limited, and the presence of such bacteria can significantly impact plant health and the overall productivity of the environment. Understanding the specifics of Candidatus Protofrankia datiscae's biology and ecology can provide valuable information for agricultural practices and ecosystem management, particularly in arid or nutrient-poor soils where these microorganisms may thrive.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusProtofrankia
SpeciesCandidatus Protofrankia datiscae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protofrankia datiscae plasmid pFSYMDG01, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta fold hydrolaseFSYMDG_RS01450Q55921Negative352889 - 35373130999.6
tetr/acrr family transcriptional regulatorFSYMDG_RS22480Not AvailableNegative353880 - 35447921966.3
rna-binding s4 domain-containing proteinFSYMDG_RS01460Not AvailableNegative354712 - 35508913868.6
duf2029 domain-containing proteinFSYMDG_RS01465Not AvailableNegative355255 - 35686256821.2
molybdopterin-dependent oxidoreductaseFSYMDG_RS01470Not AvailablePositive356977 - 35818843840.4
hypothetical proteinFSYMDG_RS01475Not AvailablePositive358185 - 35870017139.0
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigFSYMDG_RS01480Not AvailableNegative358676 - 35943127070.8
duf2064 domain-containing proteinFSYMDG_RS01485Not AvailableNegative359428 - 36012623721.6
glycosyltransferase family 2 proteinFSYMDG_RS01490P9WMY0Negative360123 - 36078223733.9
response regulator transcription factorFSYMDG_RS01495A0QTK2Positive361148 - 36186726655.0

Displaying genes 311 – 320 of 4596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.