Desulfotomaculum nigrificans CO-1-SRB

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfotomaculaceae

Genus

Desulfotomaculum

Description

Desulfotomaculum nigrificans CO-1-SRB is a Gram-positive, spore-forming, rod-shaped bacterium that thrives in anaerobic environments, specifically within the sludge of anaerobic bioreactors treating paper mill wastewater. This organism is motile and exhibits thermophilic characteristics, with an optimal growth temperature of 45°C and a temperature range suitable for life in high-temperature conditions. As a member of the sulfate-reducing bacteria (SRB), D. nigrificans plays a crucial role in the biogeochemical cycling of sulfur in its habitat, contributing to the reduction of sulfate and the subsequent production of hydrogen sulfide, a key process in anaerobic ecosystems. The bacterium possesses a single replicon, which may reflect its streamlined genomic organization suitable for efficient metabolism in its specific ecological niche. The ability of D. nigrificans to form spores allows it to withstand adverse environmental conditions, ensuring its survival in the fluctuating conditions often found in wastewater treatment environments. This adaptability may enhance its significance in biotechnological applications, particularly in the treatment of industrial waste, where the breakdown of complex organic materials and the mitigation of undesirable compounds are essential. In summary, the presence of Desulfotomaculum nigrificans CO-1-SRB in anaerobic bioreactor sludge not only highlights its role in sulfate reduction but also emphasizes its potential application in the bioremediation of paper mill wastewater, showcasing the interplay between microbial life and industrial processes. The bacterial accession number for further reference is NC_015565.1.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfotomaculaceae
GenusDesulfotomaculum
SpeciesDesulfotomaculum nigrificans
StrainCO-1-SRB

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
Habitatsludge of an anaerobic bioreactor treating paper mill wastewater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfotomaculum nigrificans CO-1-SRB, complete sequence.

Gene Summary

Adenine Count

772092 bp

Thymine Count

771626 bp

Guanine Count

674126 bp

Cytosine Count

674411 bp

Genome Length

2892255 bp

Protein-coding Genes

2772 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
card family transcriptional regulatorDESCA_RS01015Not AvailablePositive199634 - 20011017926.0
pin/tram domain-containing proteinDESCA_RS01020Not AvailablePositive200249 - 20138540560.6
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseDESCA_RS01025Not AvailablePositive201378 - 20208225199.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseDESCA_RS01030Not AvailablePositive202073 - 20254916894.7
glutamine--trna ligase/yqey domain fusion proteinDESCA_RS01035Not AvailablePositive202616 - 20429564711.9
hypothetical proteinDESCA_RS01040Not AvailableNegative204381 - 20471312792.2
glutamate--trna ligaseDESCA_RS01045Not AvailablePositive204965 - 20642254864.1
serine o-acetyltransferaseDESCA_RS01050Not AvailablePositive206555 - 20725025069.6
cysteine--trna ligaseDESCA_RS01055Not AvailablePositive207237 - 20869755130.0
mini-ribonuclease 3DESCA_RS01060Not AvailablePositive208700 - 20910414749.0

Displaying genes 201 – 210 of 2867 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.