Dokdonia sp. 4H-3-7-5

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. 4H-3-7-5 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The bacterial strain is cataloged under the accession number NC_015496.1, which provides a reference for its genomic sequence and related biological data. As a member of the Dokdonia genus, this bacterium is likely involved in marine ecosystems, where it can play a significant role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling. The Gram-negative nature of Dokdonia sp. 4H-3-7-5 suggests that it possesses an outer membrane, which may confer advantages in surviving in diverse environmental conditions, such as varying salinity and nutrient availability. The ecological insight derived from studying Dokdonia sp. 4H-3-7-5 lies in its potential contribution to marine microbial communities. Given its rod shape and single replicon, this bacterium may be well-suited for efficient nutrient uptake and growth in oligotrophic marine environments, where resources can be limited. Understanding the traits and ecological roles of Dokdonia sp. 4H-3-7-5 could enhance our knowledge of microbial dynamics in marine systems and inform broader studies on microbial ecology and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. 4H-3-7-5
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. 4H-3-7-5


Gene Summary

Adenine Count

1061707 bp

Thymine Count

1064187 bp

Guanine Count

629211 bp

Cytosine Count

634888 bp

Genome Length

3389993 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine hydrolaseKRODI_RS00105Not AvailablePositive25997 - 2711242781.2
phna domain-containing proteinKRODI_RS00110Not AvailablePositive27214 - 2777721585.6
nad(p)h-dependent flavin oxidoreductaseKRODI_RS00115Not AvailableNegative27855 - 2880234214.5
s8 family serine peptidaseKRODI_RS00120Not AvailableNegative28802 - 3041858344.5
trna 2-thiouridine(34) synthase mnmaKRODI_RS00125Not AvailableNegative30461 - 3165444414.1
toxin-antitoxin system ywqk family antitoxinKRODI_RS00130Not AvailableNegative31817 - 3250926847.9
fasciclin domain-containing proteinKRODI_RS00135Not AvailablePositive32586 - 3398648077.8
dipeptidyl-peptidase 3 family proteinKRODI_RS00140Not AvailableNegative34137 - 3616175738.9
srpbcc family proteinKRODI_RS00145Not AvailablePositive36249 - 3728038497.5
fluoride efflux transporter crcbKRODI_RS00150Not AvailablePositive37287 - 3765812928.9

Displaying genes 21 – 30 of 3033 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.