Dokdonia sp. 4H-3-7-5

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. 4H-3-7-5 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The bacterial strain is cataloged under the accession number NC_015496.1, which provides a reference for its genomic sequence and related biological data. As a member of the Dokdonia genus, this bacterium is likely involved in marine ecosystems, where it can play a significant role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling. The Gram-negative nature of Dokdonia sp. 4H-3-7-5 suggests that it possesses an outer membrane, which may confer advantages in surviving in diverse environmental conditions, such as varying salinity and nutrient availability. The ecological insight derived from studying Dokdonia sp. 4H-3-7-5 lies in its potential contribution to marine microbial communities. Given its rod shape and single replicon, this bacterium may be well-suited for efficient nutrient uptake and growth in oligotrophic marine environments, where resources can be limited. Understanding the traits and ecological roles of Dokdonia sp. 4H-3-7-5 could enhance our knowledge of microbial dynamics in marine systems and inform broader studies on microbial ecology and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. 4H-3-7-5
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. 4H-3-7-5, complete sequence.

Gene Summary

Adenine Count

1061707 bp

Thymine Count

1064187 bp

Guanine Count

629211 bp

Cytosine Count

634888 bp

Genome Length

3389993 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinKRODI_RS12970Not AvailableNegative2918168 - 291854513735.2
head gin domain-containing proteinKRODI_RS12975Not AvailableNegative2918607 - 291941630046.6
acyloxyacyl hydrolaseKRODI_RS12980Not AvailableNegative2919413 - 292050141022.0
hypothetical proteinKRODI_RS12985Not AvailableNegative2920570 - 292115422807.7
sir2 family nad-dependent protein deacylaseKRODI_RS12990Not AvailableNegative2921158 - 292184725567.6
trmh family rna methyltransferaseKRODI_RS12995Not AvailablePositive2921903 - 292255925370.2
peroxiredoxin-like family proteinKRODI_RS13000Not AvailablePositive2922664 - 292329923395.9
carboxypeptidase-like regulatory domain-containing proteinKRODI_RS13005Not AvailableNegative2923396 - 292420530585.5
dead/deah box helicaseKRODI_RS13010Not AvailableNegative2924292 - 292622672143.0
non-canonical purine ntp diphosphataseKRODI_RS13015Not AvailableNegative2926396 - 292697421129.9

Displaying genes 2621 – 2630 of 3033 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.