Dokdonia sp. 4H-3-7-5

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. 4H-3-7-5 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The bacterial strain is cataloged under the accession number NC_015496.1, which provides a reference for its genomic sequence and related biological data. As a member of the Dokdonia genus, this bacterium is likely involved in marine ecosystems, where it can play a significant role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling. The Gram-negative nature of Dokdonia sp. 4H-3-7-5 suggests that it possesses an outer membrane, which may confer advantages in surviving in diverse environmental conditions, such as varying salinity and nutrient availability. The ecological insight derived from studying Dokdonia sp. 4H-3-7-5 lies in its potential contribution to marine microbial communities. Given its rod shape and single replicon, this bacterium may be well-suited for efficient nutrient uptake and growth in oligotrophic marine environments, where resources can be limited. Understanding the traits and ecological roles of Dokdonia sp. 4H-3-7-5 could enhance our knowledge of microbial dynamics in marine systems and inform broader studies on microbial ecology and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. 4H-3-7-5
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. 4H-3-7-5, complete sequence.

Gene Summary

Adenine Count

1061707 bp

Thymine Count

1064187 bp

Guanine Count

629211 bp

Cytosine Count

634888 bp

Genome Length

3389993 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lola family proteinKRODI_RS01035Not AvailablePositive244488 - 24510823159.9
lptf/lptg family permeaseKRODI_RS01040Not AvailablePositive245172 - 24682763057.0
3,4-dihydroxy-2-butanone-4-phosphate synthaseKRODI_RS01045Not AvailablePositive246894 - 24803641831.1
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive248206 - 248304Not Available
glutaminyl-peptide cyclotransferaseKRODI_RS01050Not AvailablePositive248389 - 24945039136.4
carboxypeptidase-like regulatory domain-containing proteinKRODI_RS01055Not AvailablePositive249542 - 25028827503.0
hypothetical proteinKRODI_RS01060Not AvailablePositive250334 - 25189056723.6
m23 family metallopeptidaseKRODI_RS01065Not AvailablePositive251908 - 25273231306.2
duf5686 and carboxypeptidase regulatory-like domain-containing proteinKRODI_RS01070Not AvailableNegative252740 - 25521793072.9
hypothetical proteinKRODI_RS01075Not AvailableNegative255242 - 25597627958.9

Displaying genes 211 – 220 of 3033 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.