Dokdonia sp. 4H-3-7-5

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sp. 4H-3-7-5 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The bacterial strain is cataloged under the accession number NC_015496.1, which provides a reference for its genomic sequence and related biological data. As a member of the Dokdonia genus, this bacterium is likely involved in marine ecosystems, where it can play a significant role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling. The Gram-negative nature of Dokdonia sp. 4H-3-7-5 suggests that it possesses an outer membrane, which may confer advantages in surviving in diverse environmental conditions, such as varying salinity and nutrient availability. The ecological insight derived from studying Dokdonia sp. 4H-3-7-5 lies in its potential contribution to marine microbial communities. Given its rod shape and single replicon, this bacterium may be well-suited for efficient nutrient uptake and growth in oligotrophic marine environments, where resources can be limited. Understanding the traits and ecological roles of Dokdonia sp. 4H-3-7-5 could enhance our knowledge of microbial dynamics in marine systems and inform broader studies on microbial ecology and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sp. 4H-3-7-5
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sp. 4H-3-7-5, complete sequence.

Gene Summary

Adenine Count

1061707 bp

Thymine Count

1064187 bp

Guanine Count

629211 bp

Cytosine Count

634888 bp

Genome Length

3389993 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gh3 auxin-responsive promoter family proteinKRODI_RS08760Not AvailableNegative1981462 - 198298257178.6
m12 family metallopeptidaseKRODI_RS15440Not AvailableNegative1983127 - 198428741902.8
retropepsin-like aspartic proteaseKRODI_RS08770Not AvailableNegative1984548 - 198498516092.5
tatd family hydrolaseKRODI_RS08775Not AvailablePositive1985107 - 198588329574.9
glycerol acyltransferaseKRODI_RS08780Not AvailablePositive1985954 - 198707543225.8
asparaginaseKRODI_RS08785Not AvailablePositive1987072 - 198809437712.8
Trna-serNot AvailableNot AvailablePositive1988261 - 1988345Not Available
gliding motility-associated c-terminal domain-containing proteinKRODI_RS08795Not AvailablePositive1988791 - 2004447527060.0
type ix secretion system membrane protein porp/sprfKRODI_RS08800Not AvailablePositive2004480 - 200539433862.4
ompa family proteinKRODI_RS08805Not AvailablePositive2005405 - 200736374037.0

Displaying genes 1771 – 1780 of 3033 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.