Desulfobacca acetoxidans DSM 11109

Gram-negativeNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfobaccia

Order

Desulfobaccales

Family

Desulfobaccaceae

Genus

Desulfobacca

Description

Desulfobacca acetoxidans DSM 11109 is a Gram-negative, anaerobic bacterium that thrives as a free-living organism in freshwater sludge environments. This organism exhibits a unique cell arrangement, typically forming pairs, and is characterized by its organoheterotrophic metabolism. It does not exhibit mobility, despite having flagella, indicating that the flagella may serve a different function rather than for motility. D. acetoxidans is classified as mesophilic, indicating that it grows optimally at moderate temperatures. The bacterium has a single replicon and possesses two membranes, which is consistent with its classification in the Proteobacteria phylum. Importantly, D. acetoxidans does not form spores and is not associated with pathogenicity, making it a non-pathogenic member of its microbial community. The ecological role of D. acetoxidans can be inferred from its metabolic capabilities and habitat. As an organoheterotroph, it plays a significant role in the degradation of organic matter in anaerobic freshwater environments, contributing to nutrient cycling and the maintenance of the ecosystem's health. Its presence in sludge indicates its potential importance in bioremediation processes and organic waste treatment, where it could help in breaking down complex organic compounds. The accession number for further genomic analysis of D. acetoxidans is NC_015388.1, providing a resource for studying its genetic makeup and metabolic pathways.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfobaccia
OrderDesulfobaccales
FamilyDesulfobaccaceae
GenusDesulfobacca
SpeciesDesulfobacca acetoxidans
StrainDSM 11109

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water- Sludge
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs
SporulationNonsporulating
Energy sourceOrganoheterotroph
PathogenicityNo

Genome Summary

Desulfobacca acetoxidans DSM 11109, complete sequence.

Gene Summary

Adenine Count

772547 bp

Thymine Count

773819 bp

Guanine Count

868763 bp

Cytosine Count

867407 bp

Genome Length

3282536 bp

Protein-coding Genes

2917 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate epimeraseDESAC_RS12390Not AvailablePositive2766642 - 276746329754.7
4-hydroxy-tetrahydrodipicolinate synthaseDESAC_RS12395Not AvailablePositive2767479 - 276835131438.4
4-hydroxy-tetrahydrodipicolinate reductaseDESAC_RS12400Not AvailablePositive2768446 - 276924928205.5
fumarylacetoacetate hydrolase family proteinDESAC_RS12405Not AvailablePositive2769509 - 277026727519.2
zf-tfiib domain-containing proteinDESAC_RS12410Not AvailablePositive2770277 - 277061513485.6
pyridoxal phosphate-dependent aminotransferaseDESAC_RS12415Not AvailablePositive2770880 - 277204642934.3
hypothetical proteinDESAC_RS12420Not AvailablePositive2772062 - 277255018094.4
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseDESAC_RS12425Not AvailablePositive2772649 - 277314618591.8
yhs domain-containing proteinDESAC_RS12430Not AvailablePositive2773154 - 27734029494.73
fructose-6-phosphate aldolaseDESAC_RS12435Not AvailablePositive2773504 - 277416323917.2

Displaying genes 2491 – 2500 of 2981 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.