Candidatus Pelagibacter sp. IMCC9063

Gram-negativeBacilliAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. IMCC9063 is a marine, aerobic, gram-negative bacterium characterized by its bacilli shape and mesophilic temperature range. This organism has a single replicon and is categorized as free-living, indicating it does not depend on a host for survival. The habitat of Candidatus Pelagibacter sp. IMCC9063 is specifically marine environments, suggesting its adaptation to oceanic conditions. Its aerobic nature implies that it requires oxygen for metabolic processes, which aligns with its ecological role in marine ecosystems. The organism's single replicon may reflect a streamlined genome, often seen in bacteria that thrive in specific niches with limited resources. This characteristic can contribute to its efficiency in nutrient utilization, particularly in oligotrophic marine environments where such adaptations are crucial for survival. Understanding the ecological role of Candidatus Pelagibacter sp. IMCC9063 can provide insights into marine biogeochemical cycles, particularly in relation to carbon and nutrient cycling. As a free-living bacterium in the ocean, it likely plays a significant part in maintaining the microbial community structure and influencing the overall health of marine ecosystems. Its presence can serve as an indicator of environmental conditions and changes within the marine biosphere. Accessions for this bacterium are available under NC_015380.1, which provides a reference for further genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. IMCC9063
StrainIMCC9063

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMarine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. IMCC9063


Gene Summary

Adenine Count

433874 bp

Thymine Count

443971 bp

Guanine Count

202998 bp

Cytosine Count

203884 bp

Genome Length

1284727 bp

Protein-coding Genes

1395 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c-type cytochromeSAR11G3_RS02480Not AvailableNegative476360 - 47690219592.9
3-deoxy-manno-octulosonate cytidylyltransferaseSAR11G3_RS02485Not AvailablePositive476994 - 47771927546.3
prephenate dehydrataseSAR11G3_RS02490Not AvailablePositive477709 - 47855131493.9
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive478604 - 478701Not Available
dna polymerase iii subunit gamma/tauSAR11G3_RS02495Not AvailablePositive478709 - 48037663449.4
ybab/ebfc family nucleoid-associated proteinSAR11G3_RS02500Not AvailablePositive480378 - 48069511325.8
recombination mediator recrSAR11G3_RS02505Not AvailablePositive480702 - 48132222770.6
peptide deformylaseSAR11G3_RS02510Not AvailablePositive481369 - 48188119045.8
methionyl-trna formyltransferaseSAR11G3_RS02515Not AvailablePositive481886 - 48280034028.0
trna pseudouridine(38-40) synthase truaSAR11G3_RS02520Not AvailablePositive482800 - 48353727832.2

Displaying genes 521 – 530 of 1433 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.