Candidatus Pelagibacter sp. IMCC9063

Gram-negativeBacilliAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. IMCC9063 is a marine, aerobic, gram-negative bacterium characterized by its bacilli shape and mesophilic temperature range. This organism has a single replicon and is categorized as free-living, indicating it does not depend on a host for survival. The habitat of Candidatus Pelagibacter sp. IMCC9063 is specifically marine environments, suggesting its adaptation to oceanic conditions. Its aerobic nature implies that it requires oxygen for metabolic processes, which aligns with its ecological role in marine ecosystems. The organism's single replicon may reflect a streamlined genome, often seen in bacteria that thrive in specific niches with limited resources. This characteristic can contribute to its efficiency in nutrient utilization, particularly in oligotrophic marine environments where such adaptations are crucial for survival. Understanding the ecological role of Candidatus Pelagibacter sp. IMCC9063 can provide insights into marine biogeochemical cycles, particularly in relation to carbon and nutrient cycling. As a free-living bacterium in the ocean, it likely plays a significant part in maintaining the microbial community structure and influencing the overall health of marine ecosystems. Its presence can serve as an indicator of environmental conditions and changes within the marine biosphere. Accessions for this bacterium are available under NC_015380.1, which provides a reference for further genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. IMCC9063
StrainIMCC9063

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMarine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. IMCC9063, complete sequence.

Gene Summary

Adenine Count

433874 bp

Thymine Count

443971 bp

Guanine Count

202998 bp

Cytosine Count

203884 bp

Genome Length

1284727 bp

Protein-coding Genes

1395 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease iiiSAR11G3_RS05490Not AvailableNegative1034628 - 103530225203.9
signal peptidase iSAR11G3_RS05495Not AvailableNegative1035302 - 103603028018.8
holo-acp synthaseSAR11G3_RS05500Not AvailableNegative1036027 - 103639513565.8
pyridoxine 5'-phosphate synthaseSAR11G3_RS07605Not AvailableNegative1036396 - 103676113893.3
pyridoxine 5'-phosphate synthaseSAR11G3_RS07610Not AvailableNegative1036725 - 103712915291.0
orotate phosphoribosyltransferaseSAR11G3_RS05510Not AvailableNegative1037130 - 103771421556.4
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseSAR11G3_RS05515Not AvailableNegative1037704 - 103941965472.6
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseSAR11G3_RS05520Not AvailableNegative1039442 - 103994519210.0
ssra-binding protein smpbSAR11G3_RS05525Not AvailableNegative1039945 - 104041818241.0
4-hydroxy-tetrahydrodipicolinate synthaseSAR11G3_RS05530Not AvailableNegative1040419 - 104129131772.2

Displaying genes 1151 – 1160 of 1433 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.