Candidatus Pelagibacter sp. IMCC9063

Gram-negativeBacilliAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. IMCC9063 is a marine, aerobic, gram-negative bacterium characterized by its bacilli shape and mesophilic temperature range. This organism has a single replicon and is categorized as free-living, indicating it does not depend on a host for survival. The habitat of Candidatus Pelagibacter sp. IMCC9063 is specifically marine environments, suggesting its adaptation to oceanic conditions. Its aerobic nature implies that it requires oxygen for metabolic processes, which aligns with its ecological role in marine ecosystems. The organism's single replicon may reflect a streamlined genome, often seen in bacteria that thrive in specific niches with limited resources. This characteristic can contribute to its efficiency in nutrient utilization, particularly in oligotrophic marine environments where such adaptations are crucial for survival. Understanding the ecological role of Candidatus Pelagibacter sp. IMCC9063 can provide insights into marine biogeochemical cycles, particularly in relation to carbon and nutrient cycling. As a free-living bacterium in the ocean, it likely plays a significant part in maintaining the microbial community structure and influencing the overall health of marine ecosystems. Its presence can serve as an indicator of environmental conditions and changes within the marine biosphere. Accessions for this bacterium are available under NC_015380.1, which provides a reference for further genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. IMCC9063
StrainIMCC9063

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMarine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. IMCC9063, complete sequence.

Gene Summary

Adenine Count

433874 bp

Thymine Count

443971 bp

Guanine Count

202998 bp

Cytosine Count

203884 bp

Genome Length

1284727 bp

Protein-coding Genes

1395 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna guanosine(34) transglycosylase tgtSAR11G3_RS05350Not AvailablePositive1009243 - 101034941052.5
Trna-lysNot AvailableNot AvailablePositive1010481 - 1010556Not Available
hypothetical proteinSAR11G3_RS07290Not AvailablePositive1010563 - 10107095782.2
m48 family metallopeptidaseSAR11G3_RS05360Not AvailableNegative1010696 - 101152330706.2
duf502 domain-containing proteinSAR11G3_RS05365Not AvailablePositive1011587 - 101221623212.2
substrate-binding domain-containing proteinSAR11G3_RS05370Not AvailablePositive1012231 - 101292925941.8
methylated-dna--[protein]-cysteine s-methyltransferaseSAR11G3_RS05375Not AvailableNegative1012960 - 101326211002.0
site-specific integraseSAR11G3_RS05380Not AvailablePositive1013393 - 101431334997.4
glycosyltransferaseSAR11G3_RS05385Not AvailableNegative1014376 - 101645180107.2
tatd family hydrolaseSAR11G3_RS05390Not AvailableNegative1016455 - 101722228917.7

Displaying genes 1121 – 1130 of 1433 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.