Marinomonas mediterranea MMB-1

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Marinomonas

Description

Marinomonas mediterranea MMB-1 is a marine, aerobic, Gram-negative bacterium characterized by its bacilli shape and mobility. This organism is classified as a chemoorganotroph, meaning it derives energy from organic compounds. Marinomonas mediterranea MMB-1 is nonsporulating and free-living, which allows it to inhabit various marine environments. The bacterium thrives in mesophilic temperature conditions, indicating that it grows optimally at moderate temperatures. It possesses two replicons, which are necessary for its genetic stability and reproduction. The accessions for this strain are NC_015276.1 and CP047696.1, providing a basis for further genomic studies. The ecological role of Marinomonas mediterranea MMB-1 in marine environments may involve the decomposition of organic matter, contributing to nutrient cycling. As a chemoorganotroph, it plays a significant part in the conversion of organic substrates, potentially influencing the availability of nutrients for other marine organisms. Its mobility may also allow it to effectively colonize different niches within its habitat, further enhancing its ecological interactions. Understanding these traits helps elucidate the functional dynamics of marine microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusMarinomonas
SpeciesMarinomonas mediterranea
StrainMMB-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMarine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Marinomonas mediterranea MMB-1, complete sequence.

Gene Summary

Adenine Count

1306068 bp

Thymine Count

1311177 bp

Guanine Count

1038159 bp

Cytosine Count

1028912 bp

Genome Length

4684316 bp

Protein-coding Genes

4155 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ornithine cyclodeaminase family proteinGV053_17595Q485R8Positive3851145 - 385208933923.6
d-tyrosyl-trna(tyr) deacylaseGV053_17600A6VT94Negative3852086 - 385252015784.0
translational gtpase typaGV053_17605P0A3B2Negative3852761 - 385458166850.9
duf2306 domain-containing proteinGV053_17610Not AvailableNegative3854787 - 385517314258.3
abc-f family atpaseGV053_17615P0A9U5Negative3855395 - 385698459161.4
mfs transporterGV053_17620P77589Negative3857100 - 385832043125.5
aldo/keto reductaseGV053_17625P54569Negative3858601 - 385958135829.9
eama family transporterGV053_17630Q1RKL2Negative3859833 - 386073832674.1
hypothetical proteinGV053_17635Not AvailableNegative3860883 - 38610958086.33
helix-turn-helix domain-containing proteinGV053_17640Q9KMA5Negative3861283 - 386158811225.6

Displaying genes 7841 – 7850 of 8588 in total

Metabolites

1751 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1751 metabolites

Health Effects

No health effects information available for this bacterium.