Desulfurobacterium thermolithotrophum DSM 11699

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Desulfurobacteriales

Family

Desulfurobacteriaceae

Genus

Desulfurobacterium

Description

Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) is a thermophilic, anaerobic, strictly autotrophic, sulphur-reducing Gram-positive bacterium isolated from a deep-sea hydrothermal chimney sample collected at the mid-Atlantic ridge. The cells occur singly or in pairs as small highly motile rods. The temperature range for growth is between 40 to 75 degrees Celsius, with an optimum at 70 degrees Celsius. The pH range for growth at 70 degrees Celsius is from 4.4 to 7.5, with an optimum around 6.0. The sea salt concentration range for growth is between 15 and 70 g/l with an optimum at 35 g/l. Elemental sulphur, thiosulphate and sulphite are reduced to hydrogen sulphide. (Adapted from PMID: 9734024). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderDesulfurobacteriales
FamilyDesulfurobacteriaceae
GenusDesulfurobacterium
SpeciesDesulfurobacterium thermolithotrophum
StrainDSM 11699

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Desulfurobacterium thermolithotrophum DSM 11699
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature70
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceAutotroph
PathogenicityNo

Genome Summary

Desulfurobacterium thermolithotrophum DSM 11699

Accession NumberNC_015185.1

Gene Summary

Adenine Count

502641 bp

Thymine Count

500431 bp

Guanine Count

271171 bp

Cytosine Count

267725 bp

Genome Length

1541968 bp

Protein-coding Genes

1551 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycosyltransferase family 4 proteinDESTER_RS00005Q58459+40 - 112540552.8
chromosomal replication initiator protein dnaaDESTER_RS00010A0Q3U6+1106 - 251553954.6
dna polymerase iii subunit betaDESTER_RS00015P0CAU5+2736 - 383340787.9
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseDESTER_RS00020Q4UN77+3837 - 436419054.0
glycerol-3-phosphate 1-o-acyltransferase plsyDESTER_RS00025Q8RFY9+4357 - 494721750.4
polyprenyl synthetase family proteinDESTER_RS00030B1XJV9+4947 - 583132760.7
1-deoxy-d-xylulose-5-phosphate synthaseDESTER_RS00035O67036+5846 - 770568594.2
4-hydroxythreonine-4-phosphate dehydrogenase pdxaDESTER_RS08125C0QTA7-7694 - 867135226.6
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiDESTER_RS00045O66679-8626 - 987946850.1
atp-dependent clp endopeptidase proteolytic subunit clppDESTER_RS00050O67357-9881 - 1048322369.4

Displaying genes 1 – 10 of 1603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

117 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da
BASm0010825N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideC8H13N2O9PChemical structure of N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average312.172Da
Monoisotopic312.0369642Da
BASm00108262-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineC8H15N3O8PChemical structure of 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineNot available
Average312.195Da
Monoisotopic312.060225Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da
BASm0010887(4R,5S)-dethiobiotinC10H18N2O3Chemical structure of (4R,5S)-dethiobiotin533-48-2
Average214.2615Da
Monoisotopic214.1317425Da
BASm0011035(S)-oxalosuccinateC6H3O7Chemical structure of (S)-oxalosuccinateNot available
Average187.085Da
Monoisotopic186.989523176Da
BASm0012597(6R)-10-formyltetrahydrofolateC20H21N7O7Chemical structure of (6R)-10-formyltetrahydrofolateNot available
Average471.431Da
Monoisotopic471.151343204Da

Displaying 111–117 of 117 metabolites