Halomonas elongata DSM 2581

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Halomonas

Description

Halophilic bacteria and archaea have developed two basically different osmoregulatory mechanisms to cope with ionic strength and the considerable water stress, namely the "salt-in-cytoplasm" mechanism and the organic osmolyte mechanism. Organisms following the salt-in-cytoplasm mechanism adapt the interior protein chemistry of the cell to high salt concentration. The osmotic adjustment of the cell can be achieved by raising the salt concentration (KCl) in the cytoplasm according to the environmental osmolarity. In contrast, microorganisms applying the organic osmolyte mechanism keep their cytoplasm, to a large extent, free of KCl and the design of the cell's interior remains basically unchanged. Instead, organisms of this group accumulate highly water-soluble organic compounds, in order to maintain an osmotic equilibrium with the surrounding medium. These molecules do not disturb the cell's metabolism, even at high cytoplasmic concentrations, and are thus aptly named "compatible solutes". Compatible solutes are beneficial for bacterial cells not only as osmoregulatory solutes, but also as protectants of proteins by mitigating detrimental effects of freezing, drying and high temperatures. The predominant compatible solutes in halophilic bacteria are the amino acid derivatives glycine-betaine and ectoine (1,4,5,6,tetra-2-methyl-4-pyrimidonecarboxylic acid).Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) is an halophilic Gram-negative bacterium isolated from a solar salt facility. It is halotolerant up to a concentration of 35% and uses ectoine as its major compatible solute. H.elongata can both, synthesize and degrade ectoine. The degradation of ectoine proceeds via hydrolysis of ectoine to -acetyl-L-2,4-diaminobutyric acid, followed by deacetylation to diaminobutyric acid. In H. elongata, diaminobutyric acid can either flow off to aspartate or re-enter the ectoine synthesis pathway, forming a cycle of ectoine synthesis and degradation. Ectoine levels are highly regulated according to external salt levels but the overall picture of its metabolism and control is not well understood. Apart from its critical role in cell adaptation to halophilic environments, ectoine can be used as a stabilizer for enzymes and as a cell protectant in skin and health care applications. Ectoine is produced annually on a scale of tons in an industrial process using H. elongata as producer. (Adapted from PMID: 20849449). (HAMAP: HALED)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusHalomonas
SpeciesHalomonas elongata
StrainDSM 2581

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Halomonas elongata DSM 2581
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Halomonas elongata DSM 2581


Gene Summary

Adenine Count

738132 bp

Thymine Count

740032 bp

Guanine Count

1286232 bp

Cytosine Count

1297429 bp

Genome Length

4061825 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative minor tail proteinHELO_RS05830P85501-1238948 - 124145891058.8
hypothetical proteinHELO_RS05835Not Available-1241547 - 124184010987.3
type ii toxin-antitoxin system higb family toxinHELO_RS05840P64579+1241989 - 124227611280.6
type ii toxin-antitoxin system higa family antitoxinHELO_RS05845P67702+1242280 - 124270815689.4
hypothetical proteinHELO_RS05850Not Available-1242782 - 12429707000.74
Hypothetical proteinHELO_RS05855Not Available-1243078 - 124354818252.4
Hypothetical proteinHELO_RS05860Not Available-1243558 - 124449333338.1
Hypothetical proteinHELO_RS05865Not Available-1244568 - 124494513824.6
Hypothetical proteinHELO_RS05870Not Available-1244942 - 124533114123.4
Hypothetical proteinHELO_RS05875Not Available-1245333 - 124571313726.9

Displaying genes 1 – 10 of 3810 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

363 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 363 metabolites