Spirochaeta thermophila DSM 6192

Gram-negativeSpirillaMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Winmispirales

Family

Winmispiraceae

Genus

Winmispira

Description

Known members of the Spirochaeta genus are anaerobes or facultative anaerobes isolated from a variety of aquatic habitats such as the sediments and the water column of ponds, lakes, rivers and oceans. Spirochaeta thermophila is a thermophilic, free-living obligate anaerobe which is able to degrade various alpha- and beta-linked sugar polymers, including cellulose and hemicellulose, the two main components of plant biomass. Strain DSM 6192 was isolated from brackish thermal Spring RI 19 on the edge of Green Lake on Raoul Island in the Kermadec archipelago about 1000 km northeast of New Zealand. Growth occurred over the pH range 6.25-7.15 with an optimum pH of 6.95. It grows between 44 to 73 degrees Celsius with an optimum between 64 and 66 degrees Celsius. Growth occurred at NaC1 concentrations between 0.1% and 2.5%, with an optimum around 0.4%. It has been found to encode a large number of glycoside hydrolases. The genome data indicates that cellulose and hemicellulose degradation in S. thermophila is accomplished by a non-cellulosomal enzyme system (adapted from PMID 20935097 and Arch Microbiol (1991) 155:396-401). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderWinmispirales
FamilyWinmispiraceae
GenusWinmispira
SpeciesWinmispira thermophila
StrainDSM 6192

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatMarine- Hot spring
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Spirochaeta thermophila DSM 6192


Gene Summary

Adenine Count

474589 bp

Thymine Count

468046 bp

Guanine Count

765006 bp

Cytosine Count

765004 bp

Genome Length

2472645 bp

Protein-coding Genes

2245 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSTHERM_RS00005Not Available+101 - 145952664.0
dna polymerase iii subunit betaSTHERM_RS00010Not Available+1652 - 275541282.9
dna replication/repair protein recfSTHERM_RS00015Not Available+2760 - 385141349.1
dcia family proteinSTHERM_RS00020Not Available+3835 - 428417613.3
transposaseSTHERM_RS00025Not Available+4369 - 560748467.8
50s ribosomal protein l34STHERM_RS00030Not Available+5710 - 58656179.88
ribonuclease p protein componentSTHERM_RS00035Not Available+5846 - 620513911.3
membrane protein insertion efficiency factor yiddSTHERM_RS11385Not Available+6192 - 64108267.34
membrane protein insertase yidcSTHERM_RS00040Not Available+6429 - 815064672.7
rna-binding cell elongation regulator jag/elorSTHERM_RS00045Not Available+8162 - 883025296.7

Displaying genes 1 – 10 of 2300 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

713 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 713 metabolites