Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tsse | HSERO_RS03715 | Not Available | Positive | 812608 - 813096 | 17886.5 |
| type vi secretion system baseplate subunit tssf | HSERO_RS03720 | Not Available | Positive | 813097 - 814941 | 68001.5 |
| type vi secretion system baseplate subunit tssg | HSERO_RS03725 | Not Available | Positive | 814905 - 815987 | 40715.9 |
| type vi secretion system atpase tssh | HSERO_RS03730 | Not Available | Positive | 816027 - 818708 | 97015.2 |
| type vi secretion system vgr family protein | HSERO_RS03735 | Not Available | Positive | 818820 - 821654 | 99874.5 |
| hypothetical protein | HSERO_RS03740 | Not Available | Positive | 821697 - 822632 | 34628.2 |
| t6ss effector bth_i2691 family protein | HSERO_RS03745 | Not Available | Positive | 822654 - 825866 | 117368.0 |
| duf6708 domain-containing protein | HSERO_RS03750 | Not Available | Positive | 825863 - 826816 | 36754.6 |
| duf6708 domain-containing protein | HSERO_RS03755 | Not Available | Positive | 827071 - 828072 | 38746.9 |
| duf6708 domain-containing protein | HSERO_RS03760 | Not Available | Positive | 827993 - 829105 | 43118.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


