Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HSERO_RS24625 | Not Available | Negative | 802303 - 802506 | 7368.75 |
| hypothetical protein | HSERO_RS03670 | Not Available | Negative | 802528 - 802962 | 16413.7 |
| type vi secretion system vgr family protein | HSERO_RS03675 | Not Available | Negative | 803061 - 805925 | 101913.0 |
| type ivb secretion system protein icmh/dotu | HSERO_RS03680 | Not Available | Negative | 805963 - 806748 | 28743.6 |
| type vi secretion system baseplate subunit tssk | HSERO_RS03685 | Not Available | Negative | 806751 - 808097 | 49959.0 |
| type vi secretion system lipoprotein tssj | HSERO_RS03690 | Not Available | Negative | 808195 - 808833 | 22591.4 |
| hypothetical protein | HSERO_RS03695 | Not Available | Positive | 809228 - 809857 | 21610.7 |
| type vi secretion system contractile sheath small subunit | HSERO_RS03700 | Not Available | Positive | 809942 - 810442 | 18967.8 |
| type vi secretion system contractile sheath large subunit | HSERO_RS03705 | Not Available | Positive | 810454 - 811941 | 54648.4 |
| hcp family type vi secretion system effector | HSERO_RS03710 | Not Available | Positive | 811974 - 812465 | 17945.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


