Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-e domain-containing protein | HSERO_RS03175 | Not Available | Negative | 694571 - 695572 | 38098.1 |
| circularly permuted type 2 atp-grasp protein | HSERO_RS03180 | Not Available | Negative | 695574 - 697001 | 53348.3 |
| cupin domain-containing protein | HSERO_RS03185 | Not Available | Negative | 697270 - 697713 | 16183.2 |
| glutathione s-transferase family protein | HSERO_RS03190 | Not Available | Negative | 697789 - 698445 | 24507.7 |
| polyhydroxyalkanoate depolymerase | HSERO_RS03195 | Not Available | Positive | 698712 - 699938 | 45519.8 |
| duf2126 domain-containing protein | HSERO_RS03200 | Not Available | Positive | 700133 - 703519 | 127008.0 |
| circularly permuted type 2 atp-grasp protein | HSERO_RS03205 | Not Available | Positive | 703613 - 706114 | 92784.4 |
| transglutaminase family protein | HSERO_RS03210 | Not Available | Positive | 706125 - 707060 | 34356.1 |
| sodium:solute symporter family protein | HSERO_RS03215 | Not Available | Negative | 707081 - 709132 | 74459.3 |
| duf4212 domain-containing protein | HSERO_RS03220 | Not Available | Negative | 709122 - 709406 | 11238.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


