Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system vgr family protein | HSERO_RS21595 | Not Available | Positive | 4943658 - 4946318 | 98981.5 |
| esterase/lipase family protein | HSERO_RS21600 | Not Available | Positive | 4946315 - 4947919 | 59727.1 |
| t6ss immunity protein tli4 family protein | HSERO_RS21605 | Not Available | Positive | 4948037 - 4949029 | 37504.8 |
| paar domain-containing protein | HSERO_RS21610 | Not Available | Positive | 4949058 - 4949324 | 8947.87 |
| basic amino acid abc transporter substrate-binding protein | HSERO_RS21615 | Not Available | Positive | 4949572 - 4950387 | 29003.8 |
| amino acid abc transporter permease | HSERO_RS21620 | Not Available | Positive | 4950529 - 4951272 | 27404.2 |
| tigr03862 family flavoprotein | HSERO_RS21625 | Not Available | Positive | 4951351 - 4952649 | 46658.2 |
| slyx family protein | HSERO_RS21630 | Not Available | Positive | 4952646 - 4952855 | 8250.79 |
| dna polymerase iv | HSERO_RS21635 | Not Available | Positive | 4952877 - 4954031 | 41832.3 |
| recombination-associated protein rdgc | HSERO_RS21640 | Not Available | Positive | 4954148 - 4955074 | 34420.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


