Herbaspirillum seropedicae SmR1

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae SmR1 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its mobility. This organism is mesophilic, thriving in moderate temperature ranges that are typically conducive to various biological activities. H. seropedicae SmR1 is free-living and does not exhibit pathogenicity, indicating that it does not cause disease in its associated hosts. The bacterium features a unique structure with two membranes and contains a single replicon, which is a key characteristic of its genetic organization. Its habitat is primarily host-associated, suggesting that it may inhabit specific environments linked to host organisms, although it does not rely on them for survival. The ecological role of H. seropedicae SmR1 may involve interactions with plants, as some strains of Herbaspirillum are known for their beneficial effects on plant growth. This relationship could be important for nutrient cycling and soil health, reinforcing the significance of free-living bacteria in maintaining ecological balance within their environments. The accession number NC_014323.1 provides a reference for genomic studies, which could further elucidate the functional capabilities and ecological contributions of H. seropedicae SmR1 in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainSmR1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herbaspirillum seropedicae SmR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Setaria viridis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Herbaspirillum seropedicae SmR1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4759 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1,2-phenylacetyl-coa epoxidase subunit paacHSERO_RS20620Not AvailablePositive4728633 - 472938528327.8
1,2-phenylacetyl-coa epoxidase subunit paadHSERO_RS20625Not AvailablePositive4729382 - 472992719699.6
1,2-phenylacetyl-coa epoxidase subunit paaeHSERO_RS20630Not AvailablePositive4729991 - 473106139704.3
phenylacetic acid degradation protein paanHSERO_RS20635Not AvailablePositive4731084 - 473276960246.7
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paagHSERO_RS20640Not AvailablePositive4732796 - 473358728097.0
3-hydroxyacyl-coa dehydrogenaseHSERO_RS20645Not AvailablePositive4733589 - 473512755567.1
hydroxyphenylacetyl-coa thioesterase paaiHSERO_RS20650Not AvailablePositive4735120 - 473559616952.3
phenylacetate--coa ligase paakHSERO_RS20655Not AvailablePositive4735646 - 473698649559.5
3-oxoadipyl-coa thiolaseHSERO_RS20660Not AvailablePositive4737020 - 473822541642.5
enoyl-coa hydratase-related proteinHSERO_RS20665Not AvailablePositive4738225 - 473901328042.9

Displaying genes 4201 – 4210 of 4900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039658Bifidobacterium pseudocatenulatumNot availableNot availableNot available
BASm0039669Erysipelotrichaceae bacterium 21_3Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.