Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-phenylacetyl-coa epoxidase subunit paac | HSERO_RS20620 | Not Available | Positive | 4728633 - 4729385 | 28327.8 |
| 1,2-phenylacetyl-coa epoxidase subunit paad | HSERO_RS20625 | Not Available | Positive | 4729382 - 4729927 | 19699.6 |
| 1,2-phenylacetyl-coa epoxidase subunit paae | HSERO_RS20630 | Not Available | Positive | 4729991 - 4731061 | 39704.3 |
| phenylacetic acid degradation protein paan | HSERO_RS20635 | Not Available | Positive | 4731084 - 4732769 | 60246.7 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paag | HSERO_RS20640 | Not Available | Positive | 4732796 - 4733587 | 28097.0 |
| 3-hydroxyacyl-coa dehydrogenase | HSERO_RS20645 | Not Available | Positive | 4733589 - 4735127 | 55567.1 |
| hydroxyphenylacetyl-coa thioesterase paai | HSERO_RS20650 | Not Available | Positive | 4735120 - 4735596 | 16952.3 |
| phenylacetate--coa ligase paak | HSERO_RS20655 | Not Available | Positive | 4735646 - 4736986 | 49559.5 |
| 3-oxoadipyl-coa thiolase | HSERO_RS20660 | Not Available | Positive | 4737020 - 4738225 | 41642.5 |
| enoyl-coa hydratase-related protein | HSERO_RS20665 | Not Available | Positive | 4738225 - 4739013 | 28042.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


