Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system atpase tssh | HSERO_RS20150 | Not Available | Negative | 4626207 - 4628876 | 97503.4 |
| type vi secretion system baseplate subunit tssg | HSERO_RS20155 | Not Available | Negative | 4628948 - 4630036 | 41476.9 |
| type vi secretion system baseplate subunit tssf | HSERO_RS20160 | Not Available | Negative | 4630000 - 4631844 | 67811.3 |
| type vi secretion system baseplate subunit tsse | HSERO_RS20165 | Not Available | Negative | 4631845 - 4632333 | 17656.2 |
| hcp family type vi secretion system effector | HSERO_RS20170 | Not Available | Negative | 4632455 - 4632946 | 17887.2 |
| type vi secretion system contractile sheath large subunit | HSERO_RS20175 | Not Available | Negative | 4632981 - 4634474 | 54759.6 |
| type vi secretion system contractile sheath small subunit | HSERO_RS20180 | Not Available | Negative | 4634485 - 4634985 | 18974.8 |
| tetratricopeptide repeat protein | HSERO_RS20185 | Not Available | Negative | 4635075 - 4635677 | 20818.7 |
| type vi secretion system lipoprotein tssj | HSERO_RS20190 | Not Available | Positive | 4636044 - 4636673 | 22571.4 |
| type vi secretion system baseplate subunit tssk | HSERO_RS20195 | Not Available | Positive | 4636735 - 4638081 | 50312.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


