Herbaspirillum seropedicae SmR1

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae SmR1 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its mobility. This organism is mesophilic, thriving in moderate temperature ranges that are typically conducive to various biological activities. H. seropedicae SmR1 is free-living and does not exhibit pathogenicity, indicating that it does not cause disease in its associated hosts. The bacterium features a unique structure with two membranes and contains a single replicon, which is a key characteristic of its genetic organization. Its habitat is primarily host-associated, suggesting that it may inhabit specific environments linked to host organisms, although it does not rely on them for survival. The ecological role of H. seropedicae SmR1 may involve interactions with plants, as some strains of Herbaspirillum are known for their beneficial effects on plant growth. This relationship could be important for nutrient cycling and soil health, reinforcing the significance of free-living bacteria in maintaining ecological balance within their environments. The accession number NC_014323.1 provides a reference for genomic studies, which could further elucidate the functional capabilities and ecological contributions of H. seropedicae SmR1 in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainSmR1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herbaspirillum seropedicae SmR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Setaria viridis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Herbaspirillum seropedicae SmR1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4759 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter substrate-binding proteinHSERO_RS19255Not AvailableNegative4414291 - 441523833912.0
glu/leu/phe/val family dehydrogenaseHSERO_RS19260Not AvailableNegative4416099 - 441739146452.7
lysr family transcriptional regulatorHSERO_RS19265Not AvailableNegative4417728 - 441872337178.5
abcb family abc transporter atp-binding protein/permeaseHSERO_RS19270Not AvailableNegative4418799 - 442070370450.3
acyl-coa thioesteraseHSERO_RS19275Not AvailablePositive4420856 - 442129015611.8
2-hydroxyacid dehydrogenaseHSERO_RS19280Not AvailablePositive4421413 - 442236333576.6
long-chain-fatty-acid--coa ligaseHSERO_RS19285Not AvailableNegative4422449 - 442414961942.3
molybdopterin-containing oxidoreductase family proteinHSERO_RS19290Not AvailableNegative4424450 - 442655575985.7
helix-turn-helix transcriptional regulatorHSERO_RS19295Not AvailablePositive4426734 - 442754330016.9
lyse family translocatorHSERO_RS19300Not AvailableNegative4427548 - 442817121839.3

Displaying genes 3921 – 3930 of 4900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039658Bifidobacterium pseudocatenulatumNot availableNot availableNot available
BASm0039669Erysipelotrichaceae bacterium 21_3Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.