Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6708 domain-containing protein | HSERO_RS17045 | Not Available | Positive | 3902848 - 3903885 | 40124.3 |
| type vi secretion system vgr family protein | HSERO_RS17050 | Not Available | Positive | 3904302 - 3906776 | 90812.3 |
| duf4123 domain-containing protein | HSERO_RS17055 | Not Available | Positive | 3906794 - 3907687 | 33435.0 |
| t6ss effector bth_i2691 family protein | HSERO_RS24860 | Not Available | Positive | 3907684 - 3910197 | 92660.0 |
| duf6708 domain-containing protein | HSERO_RS17065 | Not Available | Positive | 3910201 - 3911277 | 41925.1 |
| duf6708 domain-containing protein | HSERO_RS17070 | Not Available | Positive | 3911337 - 3912413 | 41942.3 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | HSERO_RS17075 | Not Available | Positive | 3912422 - 3913505 | 41391.4 |
| paar domain-containing protein | HSERO_RS17080 | Not Available | Positive | 3913515 - 3913778 | 8970.73 |
| duf2130 domain-containing protein | HSERO_RS17085 | Not Available | Negative | 3913819 - 3915228 | 53719.6 |
| type ii toxin-antitoxin system pemk/mazf family toxin | HSERO_RS17090 | Not Available | Negative | 3915386 - 3915706 | 11942.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


