Herbaspirillum seropedicae SmR1

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae SmR1 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its mobility. This organism is mesophilic, thriving in moderate temperature ranges that are typically conducive to various biological activities. H. seropedicae SmR1 is free-living and does not exhibit pathogenicity, indicating that it does not cause disease in its associated hosts. The bacterium features a unique structure with two membranes and contains a single replicon, which is a key characteristic of its genetic organization. Its habitat is primarily host-associated, suggesting that it may inhabit specific environments linked to host organisms, although it does not rely on them for survival. The ecological role of H. seropedicae SmR1 may involve interactions with plants, as some strains of Herbaspirillum are known for their beneficial effects on plant growth. This relationship could be important for nutrient cycling and soil health, reinforcing the significance of free-living bacteria in maintaining ecological balance within their environments. The accession number NC_014323.1 provides a reference for genomic studies, which could further elucidate the functional capabilities and ecological contributions of H. seropedicae SmR1 in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainSmR1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herbaspirillum seropedicae SmR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Setaria viridis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Herbaspirillum seropedicae SmR1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4759 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6708 domain-containing proteinHSERO_RS17045Not AvailablePositive3902848 - 390388540124.3
type vi secretion system vgr family proteinHSERO_RS17050Not AvailablePositive3904302 - 390677690812.3
duf4123 domain-containing proteinHSERO_RS17055Not AvailablePositive3906794 - 390768733435.0
t6ss effector bth_i2691 family proteinHSERO_RS24860Not AvailablePositive3907684 - 391019792660.0
duf6708 domain-containing proteinHSERO_RS17065Not AvailablePositive3910201 - 391127741925.1
duf6708 domain-containing proteinHSERO_RS17070Not AvailablePositive3911337 - 391241341942.3
16s rrna (guanine(527)-n(7))-methyltransferase rsmgHSERO_RS17075Not AvailablePositive3912422 - 391350541391.4
paar domain-containing proteinHSERO_RS17080Not AvailablePositive3913515 - 39137788970.73
duf2130 domain-containing proteinHSERO_RS17085Not AvailableNegative3913819 - 391522853719.6
type ii toxin-antitoxin system pemk/mazf family toxinHSERO_RS17090Not AvailableNegative3915386 - 391570611942.8

Displaying genes 3461 – 3470 of 4900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039658Bifidobacterium pseudocatenulatumNot availableNot availableNot available
BASm0039669Erysipelotrichaceae bacterium 21_3Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.