Herbaspirillum seropedicae SmR1

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae SmR1 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its mobility. This organism is mesophilic, thriving in moderate temperature ranges that are typically conducive to various biological activities. H. seropedicae SmR1 is free-living and does not exhibit pathogenicity, indicating that it does not cause disease in its associated hosts. The bacterium features a unique structure with two membranes and contains a single replicon, which is a key characteristic of its genetic organization. Its habitat is primarily host-associated, suggesting that it may inhabit specific environments linked to host organisms, although it does not rely on them for survival. The ecological role of H. seropedicae SmR1 may involve interactions with plants, as some strains of Herbaspirillum are known for their beneficial effects on plant growth. This relationship could be important for nutrient cycling and soil health, reinforcing the significance of free-living bacteria in maintaining ecological balance within their environments. The accession number NC_014323.1 provides a reference for genomic studies, which could further elucidate the functional capabilities and ecological contributions of H. seropedicae SmR1 in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainSmR1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herbaspirillum seropedicae SmR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Setaria viridis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Herbaspirillum seropedicae SmR1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4759 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fixh family proteinHSERO_RS16030Not AvailableNegative3660600 - 366117221163.2
cytochrome c oxidase accessory protein ccogHSERO_RS16035Not AvailableNegative3661203 - 366267555545.6
cytochrome-c oxidase, cbb3-type subunit iiiHSERO_RS16040Not AvailableNegative3662818 - 366375033838.3
cbb3-type cytochrome oxidase subunit 3HSERO_RS16045Not AvailableNegative3663743 - 36639377204.71
cytochrome-c oxidase, cbb3-type subunit iiHSERO_RS16050Not AvailableNegative3663942 - 366455623235.8
cytochrome-c oxidase, cbb3-type subunit iHSERO_RS16055Not AvailableNegative3664570 - 366599753439.3
cbb3-type cytochrome oxidase assembly protein ccosHSERO_RS16060Not AvailableNegative3666142 - 36663156221.44
heavy metal translocating p-type atpaseHSERO_RS16065Not AvailableNegative3666315 - 366883488542.2
sulfite exporter taue/safe family proteinHSERO_RS16070Not AvailableNegative3668837 - 366969129196.9
oxygen-independent coproporphyrinogen iii oxidaseHSERO_RS16075Not AvailableNegative3669704 - 367115554933.8

Displaying genes 3251 – 3260 of 4900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039658Bifidobacterium pseudocatenulatumNot availableNot availableNot available
BASm0039669Erysipelotrichaceae bacterium 21_3Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.