Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin-independent malonate decarboxylase subunit beta | HSERO_RS13455 | Not Available | Negative | 3060288 - 3061184 | 31060.6 |
| malonate decarboxylase acyl carrier protein | HSERO_RS13460 | Not Available | Negative | 3061181 - 3061495 | 11344.6 |
| malonate decarboxylase subunit alpha | HSERO_RS13465 | Not Available | Negative | 3061531 - 3063198 | 60830.1 |
| trap transporter large permease | HSERO_RS13470 | Not Available | Negative | 3063199 - 3064548 | 47467.4 |
| trap transporter small permease | HSERO_RS13475 | Not Available | Negative | 3064545 - 3065123 | 21017.0 |
| trap transporter substrate-binding protein dctp | HSERO_RS13480 | Not Available | Negative | 3065120 - 3066142 | 36761.5 |
| gntr family transcriptional regulator | HSERO_RS13485 | Not Available | Positive | 3066289 - 3066957 | 24921.8 |
| pseudouridine synthase | HSERO_RS13490 | Not Available | Negative | 3066969 - 3067868 | 34327.6 |
| type ii toxin-antitoxin system hipa family toxin | HSERO_RS13495 | Not Available | Negative | 3067865 - 3069205 | 48434.9 |
| helix-turn-helix domain-containing protein | HSERO_RS13500 | Not Available | Negative | 3069202 - 3069504 | 10661.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


