Herbaspirillum seropedicae SmR1

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae SmR1 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its mobility. This organism is mesophilic, thriving in moderate temperature ranges that are typically conducive to various biological activities. H. seropedicae SmR1 is free-living and does not exhibit pathogenicity, indicating that it does not cause disease in its associated hosts. The bacterium features a unique structure with two membranes and contains a single replicon, which is a key characteristic of its genetic organization. Its habitat is primarily host-associated, suggesting that it may inhabit specific environments linked to host organisms, although it does not rely on them for survival. The ecological role of H. seropedicae SmR1 may involve interactions with plants, as some strains of Herbaspirillum are known for their beneficial effects on plant growth. This relationship could be important for nutrient cycling and soil health, reinforcing the significance of free-living bacteria in maintaining ecological balance within their environments. The accession number NC_014323.1 provides a reference for genomic studies, which could further elucidate the functional capabilities and ecological contributions of H. seropedicae SmR1 in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainSmR1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herbaspirillum seropedicae SmR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Setaria viridis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Herbaspirillum seropedicae SmR1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4759 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine abc transporter atp-binding proteinHSERO_RS11630Not AvailablePositive2624937 - 262610641910.8
methionine abc transporter permeaseHSERO_RS11635Not AvailablePositive2626078 - 262674023369.3
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseHSERO_RS11640Not AvailablePositive2627048 - 2630446126929.0
maltose alpha-d-glucosyltransferaseHSERO_RS11645Not AvailablePositive2630589 - 2633954127180.0
1,4-alpha-glucan branching protein glgbHSERO_RS11650Not AvailablePositive2633989 - 263640390079.6
hemerythrin domain-containing proteinHSERO_RS11655Not AvailablePositive2636520 - 263699317836.3
abc transporter permease subunitHSERO_RS11660Not AvailableNegative2637100 - 263798131338.1
taurine abc transporter atp-binding proteinHSERO_RS11665Not AvailableNegative2637978 - 263876328517.5
taurine abc transporter substrate-binding proteinHSERO_RS11670Not AvailableNegative2638864 - 263987134858.6
family 2a encapsulin nanocompartment cargo protein cysteine desulfuraseHSERO_RS11675Not AvailableNegative2640109 - 264200766480.8

Displaying genes 2361 – 2370 of 4900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039658Bifidobacterium pseudocatenulatumNot availableNot availableNot available
BASm0039669Erysipelotrichaceae bacterium 21_3Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.