Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | SmR1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Setaria viridis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4759 genes
Non-Coding Genes
139 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter substrate-binding domain-containing protein | HSERO_RS11380 | Not Available | Negative | 2569966 - 2570763 | 28087.1 |
| ligase-associated dna damage response endonuclease pdem | HSERO_RS11385 | Not Available | Negative | 2570825 - 2571481 | 23650.5 |
| ligase-associated dna damage response dexh box helicase | HSERO_RS11390 | Not Available | Negative | 2571478 - 2574045 | 94558.5 |
| atp-dependent dna ligase | HSERO_RS11395 | Not Available | Negative | 2574047 - 2575714 | 61574.9 |
| ligase-associated dna damage response exonuclease | HSERO_RS11400 | Not Available | Negative | 2575707 - 2576774 | 38499.6 |
| hdod domain-containing protein | HSERO_RS11405 | Not Available | Positive | 2577067 - 2577999 | 33787.9 |
| transporter | HSERO_RS11410 | Not Available | Positive | 2578535 - 2579275 | 26423.2 |
| hypothetical protein | HSERO_RS11415 | Not Available | Positive | 2579393 - 2579599 | 7811.14 |
| 2-methylaconitate cis-trans isomerase prpf | HSERO_RS11420 | Not Available | Negative | 2579718 - 2580908 | 41571.8 |
| fe/s-dependent 2-methylisocitrate dehydratase acnd | HSERO_RS11425 | Not Available | Negative | 2580905 - 2583526 | 95665.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


