Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase hydrophobic membrane anchor subunit | AMED_RS04380 | Not Available | Negative | 908606 - 909019 | 15702.6 |
| succinate dehydrogenase, cytochrome b556 subunit | AMED_RS04385 | Not Available | Negative | 909021 - 909464 | 16280.1 |
| npcbm/new2 domain-containing protein | AMED_RS04390 | Not Available | Positive | 909860 - 911851 | 70782.2 |
| glycoside hydrolase family 97 protein | AMED_RS04395 | Not Available | Positive | 911863 - 913719 | 65938.9 |
| bmp family protein | AMED_RS04400 | Not Available | Positive | 914007 - 915149 | 38358.0 |
| abc transporter atp-binding protein | AMED_RS04405 | Not Available | Positive | 915228 - 916799 | 55504.7 |
| abc transporter permease | AMED_RS04410 | Not Available | Positive | 916796 - 917887 | 37418.6 |
| abc transporter permease | AMED_RS04415 | Not Available | Positive | 917884 - 919149 | 44196.3 |
| cytidine deaminase | AMED_RS04420 | Not Available | Positive | 919150 - 919539 | 13187.8 |
| thymidine phosphorylase | AMED_RS04425 | Not Available | Positive | 919536 - 920813 | 43138.6 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
