Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isochorismate synthase menf | AMED_RS42980 | Not Available | Negative | 9241201 - 9242418 | 42510.6 |
| integration host factor, actinobacterial type | AMED_RS42985 | Not Available | Negative | 9242503 - 9242814 | 10924.4 |
| long-chain fatty acid--coa ligase | AMED_RS42990 | Not Available | Positive | 9243259 - 9244887 | 59071.2 |
| abc transporter substrate-binding protein | AMED_RS42995 | Not Available | Positive | 9244987 - 9246276 | 45405.6 |
| carbohydrate abc transporter permease | AMED_RS43000 | Not Available | Positive | 9246273 - 9247169 | 32977.7 |
| carbohydrate abc transporter permease | AMED_RS43005 | Not Available | Positive | 9247199 - 9247984 | 28737.4 |
| tigr03767 family metallophosphoesterase | AMED_RS43010 | Not Available | Positive | 9248226 - 9249953 | 61679.1 |
| paai family thioesterase | AMED_RS43015 | Not Available | Positive | 9250010 - 9250411 | 14307.1 |
| peptidase c39 family protein | AMED_RS43020 | Not Available | Positive | 9250483 - 9251745 | 45550.3 |
| carboxymuconolactone decarboxylase family protein | AMED_RS43025 | Not Available | Negative | 9251784 - 9252233 | 16371.4 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
