Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | AMED_RS42830 | Not Available | Negative | 9212111 - 9213742 | 59888.4 |
| rok family transcriptional regulator | AMED_RS42835 | Not Available | Negative | 9213990 - 9215177 | 40275.4 |
| rok family transcriptional regulator | AMED_RS42840 | Not Available | Positive | 9215311 - 9216546 | 42447.4 |
| glycoside hydrolase family 16 protein | AMED_RS42845 | Not Available | Positive | 9217051 - 9218262 | 42826.3 |
| ricin domain-containing protein | AMED_RS49760 | Not Available | Positive | 9218500 - 9219384 | 30307.8 |
| ricin-type beta-trefoil lectin domain protein | AMED_RS42855 | Not Available | Positive | 9219381 - 9221240 | 65629.7 |
| chitinase | AMED_RS42860 | Not Available | Positive | 9221237 - 9222601 | 46865.7 |
| gntr family transcriptional regulator | AMED_RS42865 | Not Available | Negative | 9222823 - 9223545 | 26727.0 |
| mfs transporter | AMED_RS42870 | Not Available | Positive | 9223663 - 9224907 | 43903.9 |
| putative hydro-lyase | AMED_RS42875 | Not Available | Positive | 9224918 - 9225712 | 28871.0 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
