Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AMED_RS49310 | Not Available | Positive | 9053751 - 9053906 | 5645.94 |
| isochorismatase family protein | AMED_RS42090 | Not Available | Positive | 9053900 - 9054253 | 12243.5 |
| nudix domain-containing protein | AMED_RS42095 | Not Available | Positive | 9054250 - 9054642 | 14353.0 |
| tetr/acrr family transcriptional regulator | AMED_RS42100 | Not Available | Negative | 9054718 - 9055311 | 21714.0 |
| acyl-coa desaturase | AMED_RS42105 | Not Available | Negative | 9055404 - 9056369 | 36070.4 |
| Trna-gln | Not Available | Not Available | Positive | 9056577 - 9056648 | Not Available |
| diguanylate cyclase | AMED_RS42115 | Not Available | Positive | 9056685 - 9058439 | 63501.3 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | AMED_RS42120 | Not Available | Positive | 9058591 - 9060063 | 50214.3 |
| ribose-phosphate diphosphokinase | AMED_RS42125 | Not Available | Positive | 9060060 - 9061040 | 35575.9 |
| tigr03621 family f420-dependent llm class oxidoreductase | AMED_RS42130 | Not Available | Positive | 9061104 - 9061970 | 31906.8 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
