Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AMED_RS40950 | Not Available | Positive | 8800257 - 8801255 | 36693.8 |
| yjdf family protein | AMED_RS40955 | Not Available | Negative | 8801567 - 8801992 | 15489.4 |
| type ii toxin-antitoxin system vapc family toxin | AMED_RS40960 | Not Available | Negative | 8802142 - 8802585 | 16051.2 |
| toxin-antitoxin system hicb family antitoxin | AMED_RS40965 | Not Available | Negative | 8802579 - 8802866 | 10653.6 |
| adenosylhomocysteinase | AMED_RS40970 | Not Available | Negative | 8802977 - 8804449 | 53940.5 |
| membrane protein | AMED_RS40975 | Not Available | Positive | 8804544 - 8806814 | 78838.3 |
| lpxtg cell wall anchor domain-containing protein | AMED_RS40980 | Not Available | Negative | 8806865 - 8807551 | 23508.7 |
| amino acid permease | AMED_RS40985 | Not Available | Negative | 8807821 - 8809347 | 53562.1 |
| cation diffusion facilitator family transporter | AMED_RS40990 | Not Available | Negative | 8809445 - 8810362 | 32098.3 |
| btad domain-containing putative transcriptional regulator | AMED_RS40995 | Not Available | Positive | 8810516 - 8813443 | 104207.0 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
