Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroloquinoline-quinone synthase pqqc | AMED_RS40250 | Not Available | Positive | 8654427 - 8655116 | 26103.2 |
| pyrroloquinoline quinone biosynthesis peptide chaperone pqqd | AMED_RS40255 | Not Available | Positive | 8655113 - 8655379 | 9657.76 |
| pyrroloquinoline quinone biosynthesis protein pqqe | AMED_RS40260 | Not Available | Positive | 8655370 - 8656434 | 38345.1 |
| pyrroloquinoline quinone biosynthesis protein pqqb | AMED_RS40265 | Not Available | Positive | 8656431 - 8657258 | 28610.4 |
| mfs transporter | AMED_RS40270 | Not Available | Positive | 8657367 - 8658590 | 41509.4 |
| hypothetical protein | AMED_RS40275 | Not Available | Negative | 8658618 - 8658875 | 9336.12 |
| amidase | AMED_RS40280 | Not Available | Negative | 8658934 - 8660316 | 48294.1 |
| d-2-hydroxyacid dehydrogenase | AMED_RS40285 | Not Available | Negative | 8660313 - 8661311 | 35828.8 |
| arylmalonate decarboxylase | AMED_RS40290 | Not Available | Positive | 8661413 - 8662153 | 26864.3 |
| arylmalonate decarboxylase | AMED_RS40295 | Not Available | Positive | 8662214 - 8662957 | 25925.8 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
