Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 44 protein | AMED_RS40050 | Not Available | Positive | 8609937 - 8612150 | 77971.4 |
| rok family transcriptional regulator | AMED_RS40055 | Not Available | Positive | 8612249 - 8613457 | 40568.7 |
| sugar-binding domain-containing protein | AMED_RS40060 | Not Available | Positive | 8613874 - 8616480 | 94141.5 |
| ricin-type beta-trefoil lectin domain protein | AMED_RS40065 | Not Available | Positive | 8616518 - 8617975 | 50828.6 |
| ricin-type beta-trefoil lectin domain protein | AMED_RS40070 | Not Available | Positive | 8618071 - 8619909 | 63410.3 |
| carbohydrate binding domain-containing protein | AMED_RS40075 | Not Available | Positive | 8619975 - 8621855 | 63616.2 |
| hypothetical protein | AMED_RS40080 | Not Available | Positive | 8621965 - 8622750 | 29068.4 |
| hypothetical protein | AMED_RS40085 | Not Available | Positive | 8622880 - 8623053 | 5729.96 |
| glycoside hydrolase family 44 protein | AMED_RS40090 | Not Available | Positive | 8623278 - 8625143 | 65363.5 |
| merr family transcriptional regulator | AMED_RS40095 | Not Available | Negative | 8625310 - 8625642 | 12181.2 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
