Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydroxymethyltransferase | AMED_RS38665 | Not Available | Negative | 8344978 - 8346240 | 45285.1 |
| gntr family transcriptional regulator | AMED_RS38670 | Not Available | Positive | 8346298 - 8346945 | 23687.6 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | AMED_RS38675 | Not Available | Negative | 8346955 - 8348076 | 41346.1 |
| tetr/acrr family transcriptional regulator | AMED_RS38680 | Not Available | Negative | 8348351 - 8348929 | 20815.7 |
| aldehyde dehydrogenase family protein | AMED_RS38685 | Not Available | Positive | 8348976 - 8350442 | 52221.8 |
| amino acid permease | AMED_RS38690 | Not Available | Positive | 8350476 - 8352044 | 55546.4 |
| choline dehydrogenase | AMED_RS38695 | Not Available | Positive | 8352053 - 8353711 | 61089.4 |
| is4 family transposase | AMED_RS38700 | Not Available | Positive | 8353864 - 8355246 | 49429.3 |
| bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | AMED_RS38705 | Not Available | Positive | 8355450 - 8355770 | 11273.3 |
| nad(p)/fad-dependent oxidoreductase | AMED_RS38710 | Not Available | Positive | 8355767 - 8356900 | 38796.4 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
