Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ricin-type beta-trefoil lectin domain protein | AMED_RS37810 | Not Available | Positive | 8160502 - 8162130 | 57054.6 |
| hypothetical protein | AMED_RS37815 | Not Available | Positive | 8162415 - 8162648 | 8186.78 |
| hypothetical protein | AMED_RS37820 | Not Available | Negative | 8162911 - 8163264 | 11574.6 |
| antar domain-containing protein | AMED_RS37825 | Not Available | Negative | 8163675 - 8164031 | 11951.1 |
| hypothetical protein | AMED_RS37830 | Not Available | Negative | 8164112 - 8164462 | 11358.2 |
| hypothetical protein | AMED_RS37835 | Not Available | Negative | 8164569 - 8164937 | 12030.0 |
| hypothetical protein | AMED_RS37840 | Not Available | Positive | 8165361 - 8166197 | 26932.5 |
| polysaccharide deacetylase family protein | AMED_RS37845 | Not Available | Positive | 8166194 - 8167159 | 34894.8 |
| o-antigen ligase | AMED_RS37850 | Not Available | Positive | 8167156 - 8168391 | 42653.0 |
| glycosyltransferase | AMED_RS37855 | Not Available | Positive | 8168366 - 8169418 | 36399.0 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
