Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(38-40) synthase trua | AMED_RS03675 | Not Available | Positive | 763302 - 764132 | 30017.8 |
| hypothetical protein | AMED_RS03680 | Not Available | Negative | 764202 - 764921 | 25769.5 |
| type vii secretion protein ecce | AMED_RS03685 | Not Available | Negative | 764995 - 766176 | 41453.3 |
| type vii secretion protein eccb | AMED_RS03695 | Not Available | Positive | 766849 - 768486 | 57297.2 |
| hypothetical protein | AMED_RS03700 | Not Available | Positive | 768551 - 768868 | 10570.3 |
| wxg100 family type vii secretion target | AMED_RS03705 | Not Available | Positive | 768865 - 769941 | 37199.1 |
| s8 family serine peptidase | AMED_RS03710 | Not Available | Negative | 769951 - 771561 | 55406.3 |
| type vii secretion integral membrane protein eccd | AMED_RS03715 | Not Available | Negative | 771582 - 772946 | 46245.1 |
| type vii secretion protein eccc | AMED_RS03720 | Not Available | Positive | 773305 - 777318 | 146617.0 |
| type vii secretion-associated protein | AMED_RS03725 | Not Available | Positive | 777524 - 779515 | 70572.0 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
