Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | AMED_RS35990 | Not Available | Negative | 7786374 - 7787279 | 31891.2 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | AMED_RS35995 | Not Available | Positive | 7787316 - 7787957 | 23018.5 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | AMED_RS36000 | Not Available | Positive | 7787971 - 7788984 | 34163.2 |
| adenosylcobinamide-gdp ribazoletransferase | AMED_RS36005 | Not Available | Positive | 7789202 - 7789918 | 22881.5 |
| yafy family protein | AMED_RS36010 | Not Available | Positive | 7790056 - 7790742 | 25630.0 |
| voc family protein | AMED_RS36015 | Not Available | Negative | 7790726 - 7791082 | 12551.5 |
| rv2231c family pyridoxal phosphate-dependent protein cobc | AMED_RS36020 | Not Available | Negative | 7791164 - 7792180 | 35420.4 |
| cobyrinate a,c-diamide synthase | AMED_RS36025 | Not Available | Negative | 7792173 - 7793510 | 46095.0 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | AMED_RS36030 | Not Available | Negative | 7793504 - 7794118 | 22726.9 |
| putative cobaltochelatase | AMED_RS36035 | Not Available | Negative | 7794118 - 7796058 | 68209.4 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
