Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | AMED_RS35340 | Not Available | Positive | 7640557 - 7641930 | 50010.2 |
| carbohydrate abc transporter permease | AMED_RS35345 | Not Available | Positive | 7641908 - 7642882 | 35816.0 |
| carbohydrate abc transporter permease | AMED_RS35350 | Not Available | Positive | 7642879 - 7643748 | 31332.3 |
| glycoside hydrolase family 13 protein | AMED_RS35355 | Not Available | Positive | 7643780 - 7645357 | 58760.4 |
| tetratricopeptide repeat protein | AMED_RS35360 | Not Available | Positive | 7645516 - 7648107 | 94451.9 |
| lasso peptide biosynthesis b2 protein | AMED_RS35365 | Not Available | Negative | 7648112 - 7648819 | 25568.9 |
| lasso peptide isopeptide bond-forming cyclase | AMED_RS35370 | Not Available | Negative | 7648816 - 7650567 | 62798.0 |
| hypothetical protein | AMED_RS35375 | Not Available | Negative | 7650615 - 7650764 | 5242.88 |
| rok family transcriptional regulator | AMED_RS35380 | Not Available | Positive | 7651030 - 7652250 | 43275.2 |
| hypothetical protein | AMED_RS35385 | Not Available | Positive | 7652516 - 7653874 | 50039.6 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
