Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | AMED_RS31940 | Not Available | Negative | 6928831 - 6930333 | 51672.6 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | AMED_RS31945 | Not Available | Negative | 6930330 - 6931874 | 53049.1 |
| penicillin-binding protein 2 | AMED_RS31950 | Not Available | Negative | 6932117 - 6934042 | 68055.7 |
| hypothetical protein | AMED_RS31955 | Not Available | Negative | 6934042 - 6934773 | 25592.6 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | AMED_RS31960 | Not Available | Negative | 6934770 - 6935723 | 34655.6 |
| division/cell wall cluster transcriptional repressor mraz | AMED_RS31965 | Not Available | Negative | 6935939 - 6936370 | 16147.3 |
| hypothetical protein | AMED_RS31970 | Not Available | Positive | 6936897 - 6937829 | 34256.4 |
| esx secretion-associated protein espg | AMED_RS31975 | Not Available | Negative | 6937883 - 6938614 | 25317.7 |
| ppe domain-containing protein | AMED_RS31980 | Not Available | Negative | 6938611 - 6939168 | 19131.4 |
| duf3558 domain-containing protein | AMED_RS31985 | Not Available | Negative | 6939183 - 6939722 | 18093.6 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
