Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tir domain-containing protein | AMED_RS31540 | Not Available | Negative | 6829730 - 6830227 | 18338.5 |
| hypothetical protein | AMED_RS31545 | Not Available | Positive | 6830344 - 6830808 | 17633.5 |
| hit family protein | AMED_RS31550 | Not Available | Negative | 6830782 - 6831210 | 15914.0 |
| nacht domain-containing protein | AMED_RS31555 | Not Available | Negative | 6832930 - 6835233 | 81894.9 |
| integrase | AMED_RS31560 | Not Available | Negative | 6835983 - 6836384 | 14496.3 |
| hypothetical protein | AMED_RS31565 | Not Available | Negative | 6836418 - 6836939 | 19199.4 |
| rna polymerase subunit sigma-70 | AMED_RS31570 | Not Available | Negative | 6837743 - 6838717 | 35584.5 |
| ppox class f420-dependent oxidoreductase | AMED_RS31575 | Not Available | Positive | 6838806 - 6839276 | 17001.1 |
| nad(p)/fad-dependent oxidoreductase | AMED_RS31580 | Not Available | Positive | 6839459 - 6840667 | 42147.7 |
| marr family transcriptional regulator | AMED_RS31585 | Not Available | Positive | 6840815 - 6841684 | 30412.5 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
